Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04970 ATGTGTTCCAAAGGTTCTTCTAGTAACATGATAATCGTATCCAAGGATGGGAGTGGAGATTATACAAGCGTGGGTGAAGCTATCAGAAATGCTCCGTATTATAGTGAGCAACCTTACAACATTCACATTTTGGCAGGCATTTATGAAGAGTACATTCTGATTCCACCAAGTAAGACTAATATTAAGCTCCTAGGTCATGGTTCAACCCACACAATAATACTGGGTCGCCAAAATGGTTCCACCATAGACATCCGTGGAAAGGGATTCATGGCACAGAACATTGGATTTGTGAACTCAGCGGGTTTAGATGCAAGCGCTGCAGTTGCCGTTCGTAACGAGGCAACTAATAGCATATTCTTTCAATGCTCCATCCAAGGATTCCAAGACACCTTATGGGCAGTTTCAGGCAGACAATTCTACAAGAACTGTGAAATCTATGGTACTGTTGATTTCATCTACGGCAATGCAGCCGCTGTATTTCAAGACTGCATGATTTACGCACGCTATCGACAGTTTGTGACATTCACCGCTCAGTCGCGCGAGAATCCAAACGAGAAGACAGGTTTCGCATTCCAACGTTGTAAATTCAGCATGTCACCCGAGGATGAGGAGAGAAAGTCAGAGGTGCGTGCCACGTTGGGTCGTCCTTGGAGGGCATATTCAACGGTTGCTATACTGCAGTGTTACATAGATTCAATGGTGGATCCTGGAGGTTGGGAACAGATGCCGGGACAGCCCATTGATAAGGTTACTTATGTGGAATATAAGAATGTTGGTCCTGGGTCCAACACTGATGGTAGAGTGAACTGGCCTGGTGTTAGAGTTCTTGGCAACCCAAAGGAAGCACTCCCTTTCACTGCTTCCTATCTATTGGATGCTCACTCTTGGATTCCATCTACAGGTGTTCCATTTGATAGTGGACTTTAA 927 0.4498 MCSKGSSSNMIIVSKDGSGDYTSVGEAIRNAPYYSEQPYNIHILAGIYEEYILIPPSKTNIKLLGHGSTHTIILGRQNGSTIDIRGKGFMAQNIGFVNSAGLDASAAVAVRNEATNSIFFQCSIQGFQDTLWAVSGRQFYKNCEIYGTVDFIYGNAAAVFQDCMIYARYRQFVTFTAQSRENPNEKTGFAFQRCKFSMSPEDEERKSEVRATLGRPWRAYSTVAILQCYIDSMVDPGGWEQMPGQPIDKVTYVEYKNVGPGSNTDGRVNWPGVRVLGNPKEALPFTASYLLDAHSWIPSTGVPFDSGL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04970 308 SUPERFAMILY Pectin lyase-like 7 307 IPR011050 -
Trre11g04970 308 PANTHER PECTINESTERASE 11 298 - -
Trre11g04970 308 FunFam Pectinesterase 4 7 308 - -
Trre11g04970 308 Pfam Pectinesterase 11 292 IPR000070 GO:0030599|GO:0042545
Trre11g04970 308 Gene3D - 5 308 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04970 Trre-Chr11 60335848 60337507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04970 12 308 Carbohydrate Esterase AT3G05620 42.675 1.89e-81 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04970 K01051 - gmx:102665195 441.425