Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04963 ATGGGATCAAGATTCCCTCCTATTTTACAGGGAAGTCCTAAAGATTTTTTTATGACAGTACATGTTCCTAATGAGATTTTTGGGGAAATAGATCCATTTTTCATAGCAACACATTTCCACAACCTAGGTAGTCGATGGAATTTATATGATCCTGATGGAATTCCACACCAAATTTACTTCAATCAATCACTTTTAAATCCACTAATAACTTTCGGTTGGCCTAGAATAAGACACTATTATCAATGGACTGGAGCTAAAAGACTTTCATTTCATTACTATGGTGAAGATACATTTCTAATGTGTTTTTCTGAGGGACGCGGAAATATATCTCCAGCTTCTTTTCCATCATTTCACAGCTTGAGTACAAATCGTGGCGATTATCGTTCATTCCAAATGACAATGAGTGAATCCAATGTCAATTCTTCTAAATTGATTCTTTCTGAAGAGTTTGGAAATTGGATTCAACATTCTGAATACTCTAAAATTAAACTATCTGGTCCTTTAAACAACGTTGTCACTTGCAAATTAGGAAGAAAAACACAGAATGGTTTGCAGATGTATTTTGGCAAAGGATGGAAAAGATTTTGCCAAAAAAATAACATTGTTCAAGGAAGCTGTTTGGAATTCACAAATGATGGATTTATGCATACCAATGTTTTTATTGTCGAAATAATCTAA 678 0.3363 MGSRFPPILQGSPKDFFMTVHVPNEIFGEIDPFFIATHFHNLGSRWNLYDPDGIPHQIYFNQSLLNPLITFGWPRIRHYYQWTGAKRLSFHYYGEDTFLMCFSEGRGNISPASFPSFHSLSTNRGDYRSFQMTMSESNVNSSKLILSEEFGNWIQHSEYSKIKLSGPLNNVVTCKLGRKTQNGLQMYFGKGWKRFCQKNNIVQGSCLEFTNDGFMHTNVFIVEII 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04963 225 CDD B3_DNA 128 225 IPR003340 GO:0003677
Trre11g04963 225 ProSiteProfiles B3 DNA-binding domain profile. 129 225 IPR003340 GO:0003677
Trre11g04963 225 Gene3D - 122 224 IPR015300 -
Trre11g04963 225 SUPERFAMILY DNA-binding pseudobarrel domain 126 222 IPR015300 -
Trre11g04963 225 Pfam B3 DNA binding domain 130 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04963 Trre-Chr11 60297822 60298675 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre11g04963 B3 3.1e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04963 - - tpra:123905417 244.973