Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04959 ATGAAGCTCACTGTCAAGACTCTCAAAGGCAGCCATTTCGAAATCAGGGTTCAGCCTTCTGATTCTATAATGGCGGTAAAAAAGAATATTGAAGATGTACAAGGCAAAGATAATTACCCTTGTGGACAGCAATTGCTGATTCACAATGGCAAAGTTTTGAAAGATGAAACTACATTAGCAGAGAATAAGGTCTCCGAAGACGGATTTCTTGTTGTCATGCTTAGTAAGAGTAAAGCCACGGGATCTGCTGGAACTTCATCTACTCAGACCGCTAGCAATCCACCTACAACGGTACCAACACCAGAGTCCGCACCTGTAGTACAAGCACAATCTGCAAACAACAATGCATCTGCTGCAGTTGTCGCAACTACAAATGTTACTGCAGATACTTATGGACAGGCTGCTTCAAATTTAGTTGCTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGCGGCAGCTGGGATAGAGATACCGTTAATCGTGCTTTGCGTGCAGCTTTCAATAATCCAGAGCGTGCTGTCGATTACTTGTATTCTGGAATTCCTGAAGCAGCTGAAGTTGCTGTACCGGCTGCTCAATACCCAAGTAATCAAACTGAAACAGGTGGGGTCACTTCCGGAGTTGTTCCTGGGGTCCCTAACTCATCTCCCTTGAATTTGTTTCCACAGGAGACAACTTCTGGCACTGGTGCTGGCGCTGGATCGCTTGACTTCCTTAGGAACAATCCCCAGTTTCAAGCACTGCGGACAATGGTGCAATCAAATCCACAAATTCTCCAGCCTGTACTTCAAGAGCTTGGAAAGCAAAATCCCAGTCTCTTGAGACTAATTGATGAGCATCATTCTGAGTTTCTTCAGTTGATAAATGAACCCATGGATGGTTCTGACGGGGATAATTTTGACCAACCTGAGCAAGATTTGCCTCATGCCATCAATGTGACGCCAGCTGAACAGGAAGCAATTGGAAGGCTAGAGGCTATGGGGTTTGATAGAGCCTCTGTCATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAAAATGCTGGGGATTTTGAGGATTAA 1101 0.4487 MKLTVKTLKGSHFEIRVQPSDSIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKATGSAGTSSTQTASNPPTTVPTPESAPVVQAQSANNNASAAVVATTNVTADTYGQAASNLVAGSNLEQTIQQIMDMGGGSWDRDTVNRALRAAFNNPERAVDYLYSGIPEAAEVAVPAAQYPSNQTETGGVTSGVVPGVPNSSPLNLFPQETTSGTGAGAGSLDFLRNNPQFQALRTMVQSNPQILQPVLQELGKQNPSLLRLIDEHHSEFLQLINEPMDGSDGDNFDQPEQDLPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04959 366 Pfam XPC-binding domain 241 296 IPR015360 GO:0003684|GO:0006289|GO:0043161
Trre11g04959 366 SUPERFAMILY UBA-like 300 363 IPR009060 GO:0005515
Trre11g04959 366 FunFam UV excision repair protein RAD23 homolog 313 361 - -
Trre11g04959 366 Gene3D - 313 361 - -
Trre11g04959 366 SUPERFAMILY Ubiquitin-like 1 85 IPR029071 -
Trre11g04959 366 FunFam UV excision repair protein RAD23 B 230 297 - -
Trre11g04959 366 SMART ubq_7 1 75 IPR000626 GO:0005515
Trre11g04959 366 CDD Ubl_Rad23 1 74 - -
Trre11g04959 366 Gene3D - 137 187 - -
Trre11g04959 366 SMART uba_6 322 359 IPR015940 -
Trre11g04959 366 SMART uba_6 144 184 IPR015940 -
Trre11g04959 366 CDD UBA1_Rad23_plant 138 186 - -
Trre11g04959 366 FunFam UV excision repair protein RAD23 1 80 - -
Trre11g04959 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 320 360 IPR015940 -
Trre11g04959 366 MobiDBLite consensus disorder prediction 80 103 - -
Trre11g04959 366 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Trre11g04959 366 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 355 - -
Trre11g04959 366 FunFam UV excision repair protein RAD23 homolog 137 187 - -
Trre11g04959 366 SUPERFAMILY UBA-like 141 192 IPR009060 GO:0005515
Trre11g04959 366 Gene3D - 1 80 - -
Trre11g04959 366 Pfam UBA/TS-N domain 144 182 IPR015940 -
Trre11g04959 366 Pfam UBA/TS-N domain 322 357 IPR015940 -
Trre11g04959 366 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 142 185 IPR015940 -
Trre11g04959 366 SUPERFAMILY XPC-binding domain 238 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Trre11g04959 366 SMART CBM 239 282 IPR006636 -
Trre11g04959 366 Gene3D - 230 297 IPR036353 GO:0003684|GO:0006289|GO:0043161
Trre11g04959 366 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Trre11g04959 366 PRINTS DNA repair protein Rad23 signature 348 363 IPR004806 GO:0006289
Trre11g04959 366 PRINTS DNA repair protein Rad23 signature 267 289 IPR004806 GO:0006289
Trre11g04959 366 PRINTS DNA repair protein Rad23 signature 333 347 IPR004806 GO:0006289
Trre11g04959 366 PRINTS DNA repair protein Rad23 signature 316 332 IPR004806 GO:0006289
Trre11g04959 366 NCBIfam UV excision repair protein Rad23 1 365 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04959 Trre-Chr11 60279266 60284970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04959 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 39.189 4.86e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04959 K10839 - gmx:100804038 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04959 11 60279266 60284970 Trre11g04959 11 60279266 60284970 ECH