Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04958 ATGTTTGAAACAAACGAAGAAGAAATGAACAAGAAGAAGAACCAGAACCAAAACCAAAACCAAAACCACCTGGGTCGTCGTATGTTTTCAAATCCCCTCAGTGAGATCCAAAACAACAACCAGCTTAGGCATAGTCGTAGCTGCACCACCACTCACCACCATGGCCCCACCGTACCCGTACCCGCCGACGACAACAATAAGGAAAACGCCACTGCCAACGTTTCTCTTCCAAAGTCACTATCAACAAACACAGACAAACAAAACAACGGGAGGATTGTTAAGCCTTCCTCGCTACAGTACTGCATGCAAATCAGCGATCAATTTCAACTTGCTTCTTCTGATTCTTCCCACTTTTCAAACTCTTTGAAAATTTGGGACTACTCTGACTCTGAAGCTGCTCCTGCTTCCTCCTGGTCCACTTTACCCAACAAGTCTTTGATCTGTAGACCCTTGCCTATTGATATTGGAAGGTGCACATGTGTTATTGTCAAGGAACCAATGCCTCACGGACTCTCTAATGGCACTTTCTTCTCTCTTTATACCTATGAAGGTCAGGGACGACAGAATAGGAAACTGGCTGTGGCCCACCACAAGCGCCGCACTGCCCGCTCTCACTTCACCGTTGCTCAGAACGTCAAAGGACTACTCTCCAATTCTGATGATACTTTCCTCGGGACAGTCACTGCTAACCTCACCGGCTCAAAATACCACATTTGGGATCAGGGATATCGCCGTAAGTCCCGTAGTAAACAACCAAAACCCCCTCTTGCTGTTGTTGAGTATGTACCTACAATAGCAACATGTACAGGAACTCACAGAAGCATCAAAGCATATATACCCAACCATCAATCTATGTCTTTCAAGAACACCAACCAGGTACAACATATTAAGGGACTGCCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTATACTCAAGGGATCCACTCTACAACAAGAGTACAAAACGATTTGAGCTTGACTATAGAGATAAAGGAAGGGCAGAACTTGGAATCCAGAGATCAGTCAAAAACTTTCAGCTCACTTTAGAGGAAAATGGGAAGCAGACAATCCTGCAGCTAGGGAGGGTGGGAAAGTCTACATTTGTTATGGACTACAGATACCCTTTGACTGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTGCATAGTGTAG 1203 0.448 MFETNEEEMNKKKNQNQNQNQNHLGRRMFSNPLSEIQNNNQLRHSRSCTTTHHHGPTVPVPADDNNKENATANVSLPKSLSTNTDKQNNGRIVKPSSLQYCMQISDQFQLASSDSSHFSNSLKIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGRCTCVIVKEPMPHGLSNGTFFSLYTYEGQGRQNRKLAVAHHKRRTARSHFTVAQNVKGLLSNSDDTFLGTVTANLTGSKYHIWDQGYRRKSRSKQPKPPLAVVEYVPTIATCTGTHRSIKAYIPNHQSMSFKNTNQVQHIKGLPMNWEGKLDKVHQLYSRDPLYNKSTKRFELDYRDKGRAELGIQRSVKNFQLTLEENGKQTILQLGRVGKSTFVMDYRYPLTGYQAFCICLASIDAKLCCIV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04958 400 SUPERFAMILY Tubby C-terminal domain-like 135 398 IPR025659 -
Trre11g04958 400 PANTHER TUBBY-RELATED 10 397 - -
Trre11g04958 400 Pfam Tub family 149 393 IPR000007 -
Trre11g04958 400 MobiDBLite consensus disorder prediction 46 91 - -
Trre11g04958 400 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g04958 400 MobiDBLite consensus disorder prediction 64 91 - -
Trre11g04958 400 Gene3D Tubby Protein; Chain A 139 399 IPR025659 -
Trre11g04958 400 PRINTS Tubby superfamily signature 377 399 IPR000007 -
Trre11g04958 400 PRINTS Tubby superfamily signature 223 247 IPR000007 -
Trre11g04958 400 PRINTS Tubby superfamily signature 313 330 IPR000007 -
Trre11g04958 400 PRINTS Tubby superfamily signature 356 375 IPR000007 -
Trre11g04958 400 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04958 Trre-Chr11 60276207 60278061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04958 72 293 TUB Transcription Factor Family AT1G16070 51.948 2.44e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre11g04958 Tub 9.6e-41 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04958 K19600 - rcu:8280277 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04958 11 60276207 60278061 Trre11g04958 11 60276207 60278061 ECH