Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04956 ATGGTGCGTCCGGCGGAGGAGACACCACGGAGGGCGCTGTGGAACTCCAACGTCGACCTGGTGGTCCCCAATTTTCACACGCCAAGCGTCTACTTTTACCGGCCAAATGGAGCATCCAATTTCTTCTTTGATGCAAAGATTATGAAGGAGGCTCTGAGCAAGGTACTGGTCCCGTTCTATCCAATGGCAGCTCGTCTCCGCCGTGACGAAGATGGTCGTGTTGAACTTTATTGCGACGGACAAGGGGTACTCTTCATGGAGGCTGATACAACCGCTTCCGTTGATGACTTTGGAGACTTTGCTCCAACGCTTGCTCTCCGTCAGTTAATCCCAGCCGTTGATTACTCTGCCGGTATTGAAACCTATCCACTGTTGGTGTTGCAGGTAACATATTTCAAATGTGGTGGAGTGTCGTTAGGAGTTGGTATGCAACACCATGTAGCTGATGGAGCCTCTGGTCTTCACTTCATCAATTCTTGGTCAGATGTTGCTCGTGGTCTTCATGTTTCCATCCCTCCATTCATTGATCGAACACTACTCCATGCTCGGGACCCACCTACACCTGTTTTTGATCACATTGAATACAAGCCTCCACCACCACCAATGCTTCAATCTGCAAACACTACTACTGCTGCTGCAGCAGTTTCTATTTTCAAACTGACCCGTGACCAGCTCAACATTTTGAAGGGTAAGTCCAAAGAAGATGGAAACACTGTCAACTATAGCTCCTATGAGATGTTGGCAGGTCATGTATGGAAAAGTGTAAGCAAGGCAAGAGCACTTCCTAATGATCAACAAACCAAGTTGTACATTGCAACAGATGGTAGATCAAGGCTTCAACCTCCACTTCCACAAGGTTACTTTGGCAATGTCATATTCACAACTACTCCTATAGCTATGGCAGGGGATTTAATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCACAATGCATTGTTACAAATGGACAATGATTATTTGAGATCTGCTTTGGACTATCTTGAGTTACAGCCCGATTTAAAAGCTCTTGTTCGCGGAGCACATACTTTTAAGTGTCCAAATCTTGGTATCACTAGTTGGGCAAGGTTACCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATATTCATGGGACCTGGTGGGATTGCATATGAGGGATTGTCTTTCATTATTCCAAGCTCAACAAATGATGGAAGTTTATCTGTGGCAATTGCTCTACCTCCAGAGCAGATGAAGCTGTTTCAGGAATTGTTCTATGACATTTAA 1272 0.4552 MVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPNGASNFFFDAKIMKEALSKVLVPFYPMAARLRRDEDGRVELYCDGQGVLFMEADTTASVDDFGDFAPTLALRQLIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINSWSDVARGLHVSIPPFIDRTLLHARDPPTPVFDHIEYKPPPPPMLQSANTTTAAAAVSIFKLTRDQLNILKGKSKEDGNTVNYSSYEMLAGHVWKSVSKARALPNDQQTKLYIATDGRSRLQPPLPQGYFGNVIFTTTPIAMAGDLMSKPTWYAASRIHNALLQMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKLFQELFYDI 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04956 423 Gene3D - 1 197 IPR023213 -
Trre11g04956 423 FunFam Spermidine hydroxycinnamoyl transferase 1 195 - -
Trre11g04956 423 FunFam Tryptamine hydroxycinnamoyl transferase 202 421 - -
Trre11g04956 423 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 1 421 - -
Trre11g04956 423 Gene3D - 203 423 IPR023213 -
Trre11g04956 423 Pfam Transferase family 1 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04956 Trre-Chr11 60265772 60270591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04956 1 423 Monolignol Biosynthesis Gene Families AT5G48930 75.294 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04956 K13065 - gmx:100801923 758.829