Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04955 ATGTTGATCAAGGTGAAGGACTCGACGATGGTGCGTCCGGCGGAGGAGACACCACGGAGGGCGCTGTGGAACTCCAACGTCGACCTGGTGGTCCCCAATTTTCACACGCCAAGCGTCTACTTTTACCGGCCAAATGGAGCATCCAATTTCTTCTTTGATGCAAAGATTATGAAGGAGGCTCTGAGCAAGGTACTGGTCCCGTTCTATCCAATGGCAGCTCGTCTCCGCCGTGACGAAGATGGTCGTGTTGAACTTTATTGCGACGGACAAGGGGTACTCTTCATGGAGGCTGATACAACCGCTTCCGTTGATGACTTTGGAGACTTTGCTCCAACGCTTGCTCTCCGTCAGTTAATCCCAGCCGTTGATTACTCTGCCGGTATTGAAACCTATCCACTGTTGGTGTTGCAGGTAACATATTTCAAATGTGGTGGAGTGTCGTTAGGAGTTGGTATGCAACACCATGTAGCTGATGGAGCCTCTGGTCTTCACTTCATCAATTCTTGGTCAGATGTTGCTCGTGGTCTTCATGTTTCCATCCCTCCATTCATTGATCGAACACTACTCCATGCTCGGGACCCACCTACACCTGTTTTTGATCACATTGAATACAAGCCTCCACCACCACCAATGCTTCAATCTGCAAACACTACTACTGCTGCTGCAGCAGTTTCTATTTTCAAACTGACCCGTGACCAGCTCAACATTTTGAAGGGTAAGTCCAAAGAAGATGGAAACACTGTCAACTATAGCTCCTATGAGATGTTGGCAGGTCATGTATGGAAAAGTGTAAGCAAGGCAAGAGCACTTCCTAATGATCAACAAACCAAGTTGTACATTGCAACAGATGGTAGATCAAGGCTTCAACCTCCACTTCCACAAGGTTACTTTGGCAATGTCATATTCACAACTACTCCTATAGCTATGGCAGGGGATTTAATGTCAAAACCAACATGGTATGCTGCTAGCAGAATCCACAATGCATTGTTACAAATGGACAATGATTATTTGAGATCTGCTTTGGACTATCTTGAGTTACAGCCCGATTTAAAAGCTCTTGTTCGCGGAGCACATACTTTTAAGTGTCCAAATCTTGGTATCACTAGTTGGGCAAGGTTACCAATCCATGATGCTGACTTTGGTTGGGGAAGACCCATATTCATGGGACCTGGTGGGATTGCATATGAGGGATTGTCTTTCATTATTCCAAGCTCAACAAATGATGGAAGTTTATCTGTGGCAATTGCTCTACCTCCAGAGCAGATGAAGCTGTTTCAGGAATTGTTCTATGACATTTAA 1299 0.4557 MLIKVKDSTMVRPAEETPRRALWNSNVDLVVPNFHTPSVYFYRPNGASNFFFDAKIMKEALSKVLVPFYPMAARLRRDEDGRVELYCDGQGVLFMEADTTASVDDFGDFAPTLALRQLIPAVDYSAGIETYPLLVLQVTYFKCGGVSLGVGMQHHVADGASGLHFINSWSDVARGLHVSIPPFIDRTLLHARDPPTPVFDHIEYKPPPPPMLQSANTTTAAAAVSIFKLTRDQLNILKGKSKEDGNTVNYSSYEMLAGHVWKSVSKARALPNDQQTKLYIATDGRSRLQPPLPQGYFGNVIFTTTPIAMAGDLMSKPTWYAASRIHNALLQMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWARLPIHDADFGWGRPIFMGPGGIAYEGLSFIIPSSTNDGSLSVAIALPPEQMKLFQELFYDI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04955 432 FunFam Spermidine hydroxycinnamoyl transferase 1 204 - -
Trre11g04955 432 Pfam Transferase family 3 430 - -
Trre11g04955 432 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 8 430 - -
Trre11g04955 432 Gene3D - 1 206 IPR023213 -
Trre11g04955 432 Gene3D - 212 432 IPR023213 -
Trre11g04955 432 FunFam Tryptamine hydroxycinnamoyl transferase 211 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04955 Trre-Chr11 60265745 60270591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04955 1 432 Monolignol Biosynthesis Gene Families AT5G48930 74.885 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04955 K13065 - gmx:100801923 770.77