Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04950 ATGCCTTCAAGACAAATACCTTCTACAAGTTCCAATTTTTTCACCAAACCCAAGTTCATATTCATAGCACTCACCATTTCAGCCTCTGTTGTGATTTTCTTCTCAATCCTTTACTTCCTTTACCATCTTTGGCATTCTCTTGTGCACAGAGCCAAGACCATCCCTTTTGATGCAAGTGCTCCTTTGAAGCTCCAAAGATACTCCTACAAAGACTTAAAGTTAGCCACCAATGCCTTTGACACCTCAAATATCATTGGCAAAGGTGGTTCTGGTACTGTTTTCAAGGGTGTACTTAAAGATGGAAAATTTATTGCCATCAAACGGTTGGACTCATTGTCTTTGCAATCAGAGAGAGAGTTTCAAAATGAGTTGCAGATTCTTGGAGGGTTGAGATCACCCTTTTTGGTGACCCTTTTGGGCTATTGTGTTGAAAAGAATAAGAGAATTTTGGTGTATGAGTATATGCCTAACACAAGCTTGCAAGAGTCACTCTTTGGTGATGAGTGTTTTGGTTTGAGTTGGGAGAAAAGGTTTTGTATAATAATGGATGTTGCTAGAGCATTGGAGTTTTTGCACCTTGGATGTGATCCACCTGTGATTCATGGTGATATTAAGCCAAGCAATGTGTTGCTTGATGCCGAGTTCCACGGGAAGATCTCAGATTTTGGTTTGTCAAGGATTAAGGTGGAGGAGGGTGAATTTGGAGCTGACTTGTTTAGTCAGGATTTGGGGAAGAGTCAAGATCTTTGGAAAAGCCAAGAAGACCTTTCAGGTAATTTGACTGTAGAAACTCCTGTAATTGGCACTCCTGTTGAGAGTGTTAGTGAAGTTGATTTTGCTCTTGCTTTGCAAGCCTCTTCTTCATCCAAAAATAGTAGGTCTTGTTTAAATGTCAAAGCTTTGAACTTGAACTCTTTGAATTATAATGCTAATATTGTTGGTGAAAGTGAAAGTAGGAGTGTAAATACAAAGGGTAAGGAAATTTCAAGTTTGGATATAGGAGGAGGAGGAAGGGATGATTGGAATAATAATAACAATAATAATAATAATATGTTTGTTCCTTATGATGATGAGTTTTATAGCACTGATTATAGTAAGGAGTTGACTGTTAATAATGCTTGTTTGGTTGATGATGAGAAGGAAAATGGGAAACAATGGGGAAAAGATTGGTGGTGGAAACAAGATGGAGGTGGTGAGTTATGTAGTAAAGACTATGTCATGGAGTGGATTGGGAGTCAGATTTGTCCATCAAATGCTGATTGGGATCATGATGATGGTATTGATAGTACTAAGAACAACAGCATTCAAGAGAAATCAGAGTTGGAAAGTTCAAGTCCAACAGGTATAGCCAGTGATGCAATTGCTGCAAATGGACCACAATTACAGGTATCTGTAATGGAAGATGCAGATAATGGAGTTGTTGATATGAAAGAACTGAAGGGAAAGAAAAGCCACAAGATGATCAAGAATAGGAAGATGCAAGAGTGGTGGAAAGAAGAACATCTTGCTGAATTAAGCAAGAAGAAGAACTCCAACAAGCTGAAAAGTCTTCAAACTAAATGGAAGAAAGGCTTGAAAGTGCCTCATTTTGGTCTGGGTAGAAGGTTCTATCTTTGCCAACGTCGTAATAAGAACTATGGAGAGGAAGGACAGCATGAGTGTGAACAAAATGGTGAGTTTAGCTTCAGAAGAGGTTGGAGGAAAAAAAGAAGCACGCGTTCGATTGGAAGCGACATGTGGAGTGGAGATCTTTTCAGCCGCGAACTCAGCAGCACAACTAGTATGCGAGGTACACTGTGTTATGTAGCACCGGAATATGGAGGGTGTGGATTCTTAATGGAGAAAGCTGATATATACAGTTTTGGAGTTTTGATTCTTGTAATTGTGTCTGGTAGAAGACCATTACATGTGCTTGCATCTCCTATGAAGCTAGAGAAAGCTAACTTAATTAGCTGGTGTAGACACTTGGCTCAAGCTGGTGGCAGTAACATTTTAGAACTTGTTGATGAGAAATTGAAACAAGATGATTACAACAAGGAACAAGCAAGCATGTGTATCAACTTGGCACTCACTTGTTTACAGAAAATTCCAGAGTTGAGGCCAGATATTGGAGACATTGTTAAGATTTTGAAGGGGGAGATGGAGCTTCCACCACTTCCATTTGAGTTCTCTCCTTCTCCACCTTCCAGATTATACAGCAGATCAAGGAGAAAACAGAAGAGCAATGTAGAATAA 2235 0.3942 MPSRQIPSTSSNFFTKPKFIFIALTISASVVIFFSILYFLYHLWHSLVHRAKTIPFDASAPLKLQRYSYKDLKLATNAFDTSNIIGKGGSGTVFKGVLKDGKFIAIKRLDSLSLQSEREFQNELQILGGLRSPFLVTLLGYCVEKNKRILVYEYMPNTSLQESLFGDECFGLSWEKRFCIIMDVARALEFLHLGCDPPVIHGDIKPSNVLLDAEFHGKISDFGLSRIKVEEGEFGADLFSQDLGKSQDLWKSQEDLSGNLTVETPVIGTPVESVSEVDFALALQASSSSKNSRSCLNVKALNLNSLNYNANIVGESESRSVNTKGKEISSLDIGGGGRDDWNNNNNNNNNMFVPYDDEFYSTDYSKELTVNNACLVDDEKENGKQWGKDWWWKQDGGGELCSKDYVMEWIGSQICPSNADWDHDDGIDSTKNNSIQEKSELESSSPTGIASDAIAANGPQLQVSVMEDADNGVVDMKELKGKKSHKMIKNRKMQEWWKEEHLAELSKKKNSNKLKSLQTKWKKGLKVPHFGLGRRFYLCQRRNKNYGEEGQHECEQNGEFSFRRGWRKKRSTRSIGSDMWSGDLFSRELSSTTSMRGTLCYVAPEYGGCGFLMEKADIYSFGVLILVIVSGRRPLHVLASPMKLEKANLISWCRHLAQAGGSNILELVDEKLKQDDYNKEQASMCINLALTCLQKIPELRPDIGDIVKILKGEMELPPLPFEFSPSPPSRLYSRSRRKQKSNVE 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04950 744 ProSitePatterns Protein kinases ATP-binding region signature. 85 107 IPR017441 GO:0005524
Trre11g04950 744 SMART serkin_6 79 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04950 744 SUPERFAMILY Protein kinase-like (PK-like) 59 730 IPR011009 -
Trre11g04950 744 Pfam Protein kinase domain 81 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04950 744 PANTHER OS07G0586332 PROTEIN 10 739 IPR044576 -
Trre11g04950 744 FunFam Receptor-like serine/threonine-protein kinase At4g25390 48 154 - -
Trre11g04950 744 MobiDBLite consensus disorder prediction 420 446 - -
Trre11g04950 744 ProSiteProfiles Protein kinase domain profile. 79 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04950 744 MobiDBLite consensus disorder prediction 432 446 - -
Trre11g04950 744 FunFam Receptor-like serine/threonine-protein kinase At4g25390 564 716 - -
Trre11g04950 744 Gene3D Phosphorylase Kinase; domain 1 46 154 - -
Trre11g04950 744 FunFam putative receptor-like protein kinase At1g80870 155 267 - -
Trre11g04950 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Trre11g04950 744 MobiDBLite consensus disorder prediction 721 744 - -
Trre11g04950 744 Gene3D Transferase(Phosphotransferase) domain 1 155 270 - -
Trre11g04950 744 Gene3D Transferase(Phosphotransferase) domain 1 525 716 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04950 Trre-Chr11 60232251 60234485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04950 575 710 Receptor kinase-like Gene Family AT3G58690 31.387 1.06e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Trre11g04950 Pkinase 2.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04950 - - tpra:123899844 1315.44