Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04939 ATGGATTTTTCATCTTCATGGATTAACACTTCCTTGGATCTCAACATTAATTCCCACAGGGTTCATCAACAACTTCCCAAAAATGTGGTGGAAAACAATTTTTTCTCATTGGAGATGAAGAAATCTTCTCCAAAAGAAGAGTCAAGTGGTGCTTTGGTAGATGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACAGAGATGTGTGAGAATTACAACACATTGAGAAACAACTTGATGGAATATATGAGGAAGAATCCTGATAAAGATCAGTCAAGTCCATCAAAGAAAAGAAAGTCTGATGAAATAAGTAGCGGTAACAATAATCTAATTGGAGGAGAAGGAGGCGGAGTTAATGGAAACAACTCTGAGAGCTGTTCAAGTGATGAAGATCAATCATGCAAGAAAACAATAGAATTAGAAACCTGCATTAAGGCCAAAGTTTCAAGAGTTTATTACAAACAAGAATCATCTGATTCAAGCCTTATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCTTCTCCAAGAGCATACTTTAAATGTTCATTTGCTCCAAGCTGCACAGTGAAGAAGAAAGTGCAAAGAAGTGTGGAAGATCCATCAGTAGTTGTTGCAACATATGAAGGAGAGCATAATCATCCTCATCCTTCTCAAATGGAGTCAACATCATCGGGCACAAACAACCGTTGTAGGAATCCGATAAGTTCAGCAGTGCCTTCTTCTGCACCAAGTACAGTTACCGTTGATTGGACAAAATCTAAGTGCAGCAATGAGCCTTCTTCTAAGAAAATGATGATAAATAATCCCAAAATGGAAGTACCTCAGATTTTGGTGGAACAAATGGCTACTTCATTGACCAAGGATCTTAACTTTAGAGCAGCACTAGCTGCTGCTATATCAGGAAAAATGTTGCATCAGAATTAA 966 0.3799 MDFSSSWINTSLDLNINSHRVHQQLPKNVVENNFFSLEMKKSSPKEESSGALVDELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMRKNPDKDQSSPSKKRKSDEISSGNNNLIGGEGGGVNGNNSESCSSDEDQSCKKTIELETCIKAKVSRVYYKQESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVEDPSVVVATYEGEHNHPHPSQMESTSSGTNNRCRNPISSAVPSSAPSTVTVDWTKSKCSNEPSSKKMMINNPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQN 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04939 321 MobiDBLite consensus disorder prediction 248 278 - -
Trre11g04939 321 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 30 317 IPR044810 GO:0003700
Trre11g04939 321 Pfam WRKY DNA -binding domain 170 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g04939 321 SUPERFAMILY WRKY DNA-binding domain 167 230 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g04939 321 ProSiteProfiles WRKY domain profile. 164 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g04939 321 FunFam WRKY transcription factor 40 154 231 - -
Trre11g04939 321 MobiDBLite consensus disorder prediction 90 135 - -
Trre11g04939 321 MobiDBLite consensus disorder prediction 248 279 - -
Trre11g04939 321 SMART WRKY_cls 169 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre11g04939 321 MobiDBLite consensus disorder prediction 90 108 - -
Trre11g04939 321 Gene3D WRKY domain 153 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre11g04939 321 Coils Coil 70 90 - -
Trre11g04939 321 MobiDBLite consensus disorder prediction 109 133 - -
Trre11g04939 321 MobiDBLite consensus disorder prediction 223 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04939 Trre-Chr11 60147224 60148571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04939 1 321 WRKY Transcription Factor Family AT1G80840 53.412 4.04e-100 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre11g04939 WRKY 3.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04939 - - gmx:100798375 387.111