Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04936 ATGGATCGCAACAACAAAAGGAACATTCTGTTCAACAAATACGAGATAGGTAAAATTCTAGGACAGGGTAATTTCGCGAAAGTTTACCATGGTAGAAACATAGCCACAAACGAAAACGTGGCTATAAAAGTGATTAAAAAAGAAAAGCTGAAAAAAGAGAGGCTGATGAAACAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACATATTGTTGAATTGAAAGAGGTGATGGCAAACAAAGCTAAAGTTTTCATGGTTGTTGAATATGTCAAAGGAGGTGAACTCTTTGCAAAAGTAGCAAAAGGTAAAATGGAAGAACATGTTGCTAGAAAATATTTTCAACAATTAATCAGTGCTGTTGATTTCTGTCATAGTCGTGGTGTTACACACCGTGATCTCAAACCTGAGAATCTTCTTTTGGATGAAAATGAAGATCTTAAGGTTAGTGATTTTGGTTTATCTGCTTTGCCGGATCAACGAAGATCCGACGGTATGCTTCTCACACCGTGTGGGACTCCGGCCTACGTTGCGCCGGAGGTTTTAAAAAAGATAGGCTATGATGGTTCTAAAGCTGATATTTGGTCTTGTGGTGTTATTCTTTTTGCTTTGCTTTGTGGCTATTTACCCTTTCAAGGTGAAAATGTCATGAGAATTTATAGCAAATCTTTTAAAGCTGATTATGCTTTACCTGAATGGATCTCACCAGGAGCTAAGAAATTGATATCTAATTTGCTATGTGTTGATCCTGAAAAGAGATTTTCTATACCTGATATCATGAAAGATCCTTGGTTTCAAATTGGGTTCATGAGACCTATTGCTTTCTCAATGAAAGAATCTGCTGTGGATGATAACATTGATTTCAGTGGAGATGATGAAGGCAACAACAATGGCAATGATGGACACAATGTTGAGGTTGTGGATGGGTTTAAAACAAAGCCTACTCATTCAAGACGTCCGTCTTACAATGCATTCGAGATCATTTCATCGCTGTCTCACGGATTTGATTTGAGGAACTTGTTTGAAACAAGGAAGAGATCGCCGTCAATGTTTATATCGAAAAATTCTGCTTCGGCGGTGGTGGGGAAGTTAGAGAATGTTGCAAAGGATCTGAATTTGAGAGTAACTGGGAAGAAAGATTTCATGGTGAAAATGCAGGGGGCGACGGAGGGGAGGAAAGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTGGCACCTGAGGTGGCTGTGGTTGAGTTTTCTAAGTCTGCAGGAGATACACTTGAGTATGTTAAGTTCTGTGAAGAAGAAGTTAGACCTTCTCTCAAAGACATTGTCTGGAGCTGGCAGGGTGATACTACTCACTAA 1359 0.3981 MDRNNKRNILFNKYEIGKILGQGNFAKVYHGRNIATNENVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKMEEHVARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYALPEWISPGAKKLISNLLCVDPEKRFSIPDIMKDPWFQIGFMRPIAFSMKESAVDDNIDFSGDDEGNNNGNDGHNVEVVDGFKTKPTHSRRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKNSASAVVGKLENVAKDLNLRVTGKKDFMVKMQGATEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEEEVRPSLKDIVWSWQGDTTH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04936 452 ProSiteProfiles Protein kinase domain profile. 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04936 452 Gene3D Transferase(Phosphotransferase) domain 1 4 320 - -
Trre11g04936 452 Pfam Protein kinase domain 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04936 452 ProSiteProfiles NAF domain profile. 320 345 IPR018451 GO:0007165
Trre11g04936 452 FunFam Non-specific serine/threonine protein kinase 7 308 - -
Trre11g04936 452 Coils Coil 42 62 - -
Trre11g04936 452 FunFam Non-specific serine/threonine protein kinase 5 93 - -
Trre11g04936 452 Gene3D Kinase associated domain 1, KA1 321 445 - -
Trre11g04936 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 440 - -
Trre11g04936 452 Pfam NAF domain 324 379 IPR004041 GO:0007165
Trre11g04936 452 SMART serkin_6 14 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04936 452 FunFam Non-specific serine/threonine protein kinase 320 444 - -
Trre11g04936 452 SUPERFAMILY Protein kinase-like (PK-like) 10 269 IPR011009 -
Trre11g04936 452 CDD CIPK_C 326 440 - -
Trre11g04936 452 ProSitePatterns Protein kinases ATP-binding region signature. 20 47 IPR017441 GO:0005524
Trre11g04936 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04936 Trre-Chr11 60113857 60115215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04936 6 452 CBL-interacting serine-threonine protein kinases AT5G10930 59.821 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre11g04936 Pkinase 1.8e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04936 - - gmx:100804244 712.99