Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04930 ATGGAGTATGTTACTGATAATGAGAAAAATCCAGCAGTACAAGAGAGAAGTGGGAATGGTAGTAAAAAGTATAAGAAGTCCCTCCTTGATAATTATACATGCTTCGGTGCCCAACAATTGTCCATAAAAGATGGTGCTCAACCCACCGTCACTTGTTCTTTAATGCCATCCCCTCCTCCTGTTCCTCTCGCAAAAAAGATAGGAGCTGAGTTTATAGGGACATTTATTCTCATGTTTGCTGGGACAGCCACTGCTATTGTGGACCAAAAGACAGATGGAGCGGAGACTCTGATCGGATGTGCTGCCTCTAGTGGTCTTGGTGTTATGATCATCATTCTCGCCACCGGCCACATCTCCGGTGCTCATCTCAACCCTGCAGTCACTATTTCCTTTGCTGCATTAAAGCACTTCCCGTGGAAGAATGTGCCTATGTATATTGGTGCACAAGTTATGGCATCAATATGTGCTGCATTTGCTCTCAAAAAGATTTTTCACCCTTTCATGAGTGGTGGAGTCACTGTCCCTTCTGAAGGATATGGACATGTCCAAGCTTTTGCTTTAGAGTTCATTATCAGCTTTATTCTCATGTTTGTTGTTACTGCAGTGGCCACCGACACAAGAGCTGTAGGAGAACTAGCAGGGATTGCCGTGGGAGCAACTGTGATGCTCAATATACTCATAGCAGGGCCAATAACGGGAGCGTCAATGAACCCAGTAAGAACTCTAGGTCCAGCTATTGCTACAAACAACTACGAAGCCATATGGGTCTATCTATCAGCTCCCATACTTGGAGCTCTAGTGGGGGCAGGTACCTATACTGCAGTCAAGCTGCCAGAAGAAGATGATGATATTGCAAAGACTAATATTTTTTCAAACCATCCTAGCTTCAGATGA 894 0.4452 MEYVTDNEKNPAVQERSGNGSKKYKKSLLDNYTCFGAQQLSIKDGAQPTVTCSLMPSPPPVPLAKKIGAEFIGTFILMFAGTATAIVDQKTDGAETLIGCAASSGLGVMIIILATGHISGAHLNPAVTISFAALKHFPWKNVPMYIGAQVMASICAAFALKKIFHPFMSGGVTVPSEGYGHVQAFALEFIISFILMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPITGASMNPVRTLGPAIATNNYEAIWVYLSAPILGALVGAGTYTAVKLPEEDDDIAKTNIFSNHPSFR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04930 297 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g04930 297 PANTHER AQUAPORIN NIP2-1 47 287 IPR034294 -
Trre11g04930 297 Gene3D Glycerol uptake facilitator protein. 55 285 IPR023271 -
Trre11g04930 297 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 PRINTS Major intrinsic protein family signature 65 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 PRINTS Major intrinsic protein family signature 141 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 PRINTS Major intrinsic protein family signature 104 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 SUPERFAMILY Aquaporin-like 62 281 IPR023271 -
Trre11g04930 297 FunFam Aquaporin NIP2-1 54 287 - -
Trre11g04930 297 Pfam Major intrinsic protein 63 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 NCBIfam MIP family channel protein 69 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 CDD MIP 65 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre11g04930 297 ProSitePatterns MIP family signature. 122 130 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04930 Trre-Chr11 60068272 60069704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04930 15 292 Major Intrinsic Protein MIP AT1G80760 73.477 1.46e-140 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04930 K09874 - gmx:100815637 421.779