Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04928 ATGGATCTTCTAAGATCAGAGCCATGTTCATCTCATAATTTGAACATCTTATTTTCTGATAAGAGACAGACAGAAAATGAAGAGAAAAAACATCTTCTACTGGATTTAAGTCTACCTAGTAACTATTCATGTGATGATGATTCAAAGCAAGAACTCAATCTCATAAACTGTTTTGATACAGAAACGTCGATGAACTCTTCCTCAGAATCTAATCATGGTAATGAATTAGAGCCTAGGATTTTTTCATGCAACTACTGTCAAAGAAAGTTTTATAGTTCACAGGCACTTGGTGGACACCAAAATGCACACAAGAGAGAAAGAACTATGGCAAAAAGAGGACACAAAGCTGCGGTTTCGCTAGATTTTGAACACAGGTACTCAAGTATGGCTTCTCTACCTCTCCATGGATCCTATAACAGATCATCATCTTCATCATCACCACTTGGAATTCAGGTGCATTCTTCTATGGTTCACAAACCTTCTTATCAAACACCGTTTTTCGGTTTGTCCCGTTCTCGTGCTCAAAACCAGTGGCAGAAACTGCCTATGTATTCACAACCAGCAACTGGAAATCTTACATCAGAAACTGATGGATCATCTTTGGCTAGTGGTATTCCTACAAGATCAGGTAAGTTTTCTCCAACAAAGGTGCAAGATGGATTAATTGGAGGTTACTGGTTGAATAATAGTGCTACTACTGCTACATGTTTCAAGACTAAACAAGAAGAGTTGCAGAAACTTGATTTGTCCCTCAAACTCTAA 762 0.3806 MDLLRSEPCSSHNLNILFSDKRQTENEEKKHLLLDLSLPSNYSCDDDSKQELNLINCFDTETSMNSSSESNHGNELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTMAKRGHKAAVSLDFEHRYSSMASLPLHGSYNRSSSSSSPLGIQVHSSMVHKPSYQTPFFGLSRSRAQNQWQKLPMYSQPATGNLTSETDGSSLASGIPTRSGKFSPTKVQDGLIGGYWLNNSATTATCFKTKQEELQKLDLSLKL 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04928 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Trre11g04928 253 Gene3D Classic Zinc Finger 57 134 - -
Trre11g04928 253 MobiDBLite consensus disorder prediction 187 210 - -
Trre11g04928 253 SUPERFAMILY beta-beta-alpha zinc fingers 78 109 IPR036236 -
Trre11g04928 253 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 253 IPR044246 GO:0009788
Trre11g04928 253 FunFam Zinc finger protein 2 58 127 - -
Trre11g04928 253 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04928 Trre-Chr11 60056423 60057184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04928 13 194 C2H2 Transcription Factor Family AT5G10970 43.548 1.12e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04928 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04928 - - gmx:100812573 253.062