Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04918 ATGGAGCAGTCATGGGAGGAGGATATATGGCCTCTTCGTAAGGAAATGAGTATTGAAAATTGGTTGGAGATGTGCCAAGAAGAAGACTACCTTGGTGACTACATATCTTTAGAAGCCCCAGCCGTGGCTGCTGTGACCACGACCGAGAACACACTACAAGAAATTTGCCATATATCGACGGTTGTTTCAAGTGAGATGATTGTATGCTCTAATAAGTCGCCGGAGCTGCTTCCTCCATCCACATCCTCTAGAAATTGCATTATCTCTTTTGATAACTCCGCGGTAACACCATTAAAACCATTTGTGATATCGTCCAAACCACCACGTCCGCCATGTTCAGCAAAAAAGAGGACTTCTGAGGAACTAAAGAGCTTGGAAGCAAAAGCAATTAACAAAGAAGGAGAAAAGAAGATTATAAGAAGCGGATCTAAGACTATACACACATTGGTAGAGAGGAAAAGGAGACTTGAACTCGCAAATAAGTTCATAGAGCTTTCAACTACAATTCCTAGCTTGAAGAAGAAAGACAAAGCTTCTATAGTTATGGGCGCTATCAATCACGTGGAACAACTCCAAAAAAGAGTGAAGGACACCAGCGTATTGCCGTTTGGTAGTTCAACTCTTGGCATTACTATCATTGCCAAGATGGACGATGCATACAAAACGAGAATGGTAGATCTAATGGATAACGTAAGGCAATTGCTGCTGAATGGTTCTGCAAAACATCCAACATGGTGA 738 0.4201 MEQSWEEDIWPLRKEMSIENWLEMCQEEDYLGDYISLEAPAVAAVTTTENTLQEICHISTVVSSEMIVCSNKSPELLPPSTSSRNCIISFDNSAVTPLKPFVISSKPPRPPCSAKKRTSEELKSLEAKAINKEGEKKIIRSGSKTIHTLVERKRRLELANKFIELSTTIPSLKKKDKASIVMGAINHVEQLQKRVKDTSVLPFGSSTLGITIIAKMDDAYKTRMVDLMDNVRQLLLNGSAKHPTW 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04918 245 Gene3D - 133 200 IPR036638 GO:0046983
Trre11g04918 245 Pfam Helix-loop-helix DNA-binding domain 144 192 IPR011598 GO:0046983
Trre11g04918 245 Coils Coil 115 135 - -
Trre11g04918 245 PANTHER BHLH TRANSCRIPTION FACTOR 59 196 - -
Trre11g04918 245 SMART finulus 148 197 IPR011598 GO:0046983
Trre11g04918 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 198 IPR036638 GO:0046983
Trre11g04918 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04918 Trre-Chr11 60016600 60019168 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04918 147 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 54.000 2.81e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04918 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04918 - - tpra:123896700 229.95