Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04916 ATGGACCAGTCTTGGGAAAATTGGCCTCTTCATTCGGAATTGGGTGATGATGAAGAATTTTTGAGAGACATAATCTTGCAGCAACCTGTTACATATTCTGGAAGCAGTTTATCATCCTCTAATGAAATGGACGGTTCAGATTGCTCAGGGAAAAAGGTTCTTAACCCTTCAACAACGTTGTCAAGTAGTAGTACTCCTAGGACATTTATTTTGTCTTTTGATAAATCAAAAATAATACCAGCTACTACTACACTACAAGAAGGAGAAGAAGAAGAAGAAGAAGCAAGAATTAAAAGTAGAAGCTGTGAAAAATCTAATATTAATAATAAGAGGAGTTTGGAATTACCAAAAGTGAAAGTGAGTAATAGTACAAAAAGTAGTGGAAAAAAGAGTAGAAGCGATTCTCAGTGTTTGGATCACATTATGGCTGAGAGAAAAAGGAGATTGGATATAGCACAAAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAGAAGACGGACAAGACCACTATACTTTGCGAAGCAATTAATTATGTGAAGCTACTTCAAGAACGTGTGAAGGAGCTAGAGGATCCAAACAAGAAGAGCAAAGAATCAACAATAATCCTCAAAAGAAGTGATTTGTGTGCAAATGAAGATACCACCTCAAATGACACAAATTCTGATCACGATTGTCACAAATCACTCCTTGATGTTAAAGCAAGAGTTTTGGGAAATGAGGTACTCATTGAGATTCATTGTGAGAAGGAAAATGGCATTGAGCTCAAAATATTGAACCTGCTTAAAAATCTTCATTTGATTGTCACCGCCAGCAGTGTTTTTCCTTTTGGGAACTCAAATCTTGGTTTTACTATTGTCGCTCAGATGGGTGATGGGTACAAATTGACAGTGGATGATCTTGTGAAAACCCTACGGCAAGTGCCTTTGAAGAGGTGTTAG 945 0.3725 MDQSWENWPLHSELGDDEEFLRDIILQQPVTYSGSSLSSSNEMDGSDCSGKKVLNPSTTLSSSSTPRTFILSFDKSKIIPATTTLQEGEEEEEEARIKSRSCEKSNINNKRSLELPKVKVSNSTKSSGKKSRSDSQCLDHIMAERKRRLDIAQKFIALSATIPGLKKTDKTTILCEAINYVKLLQERVKELEDPNKKSKESTIILKRSDLCANEDTTSNDTNSDHDCHKSLLDVKARVLGNEVLIEIHCEKENGIELKILNLLKNLHLIVTASSVFPFGNSNLGFTIVAQMGDGYKLTVDDLVKTLRQVPLKRC 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04916 314 MobiDBLite consensus disorder prediction 91 107 - -
Trre11g04916 314 PANTHER BHLH TRANSCRIPTION FACTOR 4 309 - -
Trre11g04916 314 MobiDBLite consensus disorder prediction 82 137 - -
Trre11g04916 314 MobiDBLite consensus disorder prediction 108 131 - -
Trre11g04916 314 SMART finulus 141 190 IPR011598 GO:0046983
Trre11g04916 314 Pfam Helix-loop-helix DNA-binding domain 138 185 IPR011598 GO:0046983
Trre11g04916 314 Gene3D - 125 201 IPR036638 GO:0046983
Trre11g04916 314 MobiDBLite consensus disorder prediction 32 65 - -
Trre11g04916 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 199 IPR036638 GO:0046983
Trre11g04916 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04916 Trre-Chr11 60000636 60005189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04916 124 307 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.579 2.12e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04916 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04916 - - tpra:123896700 434.106