Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04915 ATGGAGGATTGGTGGGAGAATTGGTTCTCTGATTTGGATATGGACATTGATAAGTCATTCAATCAATGCCAAAGGAATTCTCCCAAGTTTGGTCACTGTTCTTCTGATTCAGGGACTAATGCTGCTGTACAAGGAACAAAGAGGGTGAGAAGAAGCTCATGGAATATACAAGATCACATAATGTCAGAGAGAAAAAGGAGACATGAAATGGCAGAGAGATTCATACAACTTTCCTCTATTATACCTGGATTGAAGAAGATAGACAAGGTCTCTGTCCTTGGTGAAGCTATTAATTACGTGAAAAATCTTAAACAACGCATAGCAATGCTGGAGCAACAGAGTTATGAGAGGAGATTGCTCCTTGAAGTGGAGGCCATAGGCATTGAGTCAGAGAAAGAGCTACTTATTAGAATCCATTGTGAGAAACTTAAAGGCATTTTACTCAAACTATTGGCCTTACTTGAAAGTATGGACCTATCTGTTTCCAATAGTAGCATGCTTCCATTTGGAAAATATGCCCTCCACATTACCATCATTGCTAAGATGGGTAAGGAATACAAGATAAAAGAGGAAGAATTGGTGAAAAAGTTGAGACATGATCTTTTGAAGTTATTTGACATGCAACATGTGATTCATGCTAGTGTATCAAACAAGTAA 657 0.382 MEDWWENWFSDLDMDIDKSFNQCQRNSPKFGHCSSDSGTNAAVQGTKRVRRSSWNIQDHIMSERKRRHEMAERFIQLSSIIPGLKKIDKVSVLGEAINYVKNLKQRIAMLEQQSYERRLLLEVEAIGIESEKELLIRIHCEKLKGILLKLLALLESMDLSVSNSSMLPFGKYALHITIIAKMGKEYKIKEEELVKKLRHDLLKLFDMQHVIHASVSNK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04915 218 Gene3D - 44 118 IPR036638 GO:0046983
Trre11g04915 218 Coils Coil 93 113 - -
Trre11g04915 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 116 IPR036638 GO:0046983
Trre11g04915 218 PANTHER BHLH TRANSCRIPTION FACTOR 27 203 - -
Trre11g04915 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Trre11g04915 218 SMART finulus 60 109 IPR011598 GO:0046983
Trre11g04915 218 Pfam Helix-loop-helix DNA-binding domain 59 103 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04915 Trre-Chr11 59994009 59995654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04915 44 201 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.743 9.74e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04915 HLH 2.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04915 - - cam:101501845 238.039