Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04908 ATGGAAGAGATCGAAGTTAGTGATGATGCATTGGCAACATCGACAGAAACCTCTGAATCCAAAAATGGTCCTCCATCGAGAGCTTTTGAAGGGCAACTAACACTGCGCATGCTCACATGTAGAGTACAAAGCAACCATTCCAGTCGCACCCTATTTTCGTTTCCTGCTGCAGCCGCCGCCGCATATCAAAACGAAGGAGACGCAATTATGGGTAAGGTTCACGGTTCACTTGCTCGTGCCGGAAAAGTGAGAGGCCAAACACCTAAAGTCGCCAAACAAGACAAGAAGAAGAAGCCGCGTGGTCGTGCTCACAAGCGTATGCAGTACAATCGCAGATTCGTCACTGCCGTTGTGGGATTCGGCAAGAAGAGAGGACCAAACTCATCTGAGAAGTAA 396 0.4874 MEEIEVSDDALATSTETSESKNGPPSRAFEGQLTLRMLTCRVQSNHSSRTLFSFPAAAAAAYQNEGDAIMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04908 131 MobiDBLite consensus disorder prediction 79 108 - -
Trre11g04908 131 MobiDBLite consensus disorder prediction 10 27 - -
Trre11g04908 131 MobiDBLite consensus disorder prediction 1 28 - -
Trre11g04908 131 MobiDBLite consensus disorder prediction 91 108 - -
Trre11g04908 131 Pfam Ribosomal protein S30 72 128 IPR006846 GO:0003735|GO:0005840|GO:0006412
Trre11g04908 131 PANTHER 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI 63 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04908 Trre-Chr11 59928244 59931181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04908 70 131 Cytoplasmic Ribosomal Protein Gene Family AT5G56670 96.774 2.27e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04908 K02983 - zju:107424007 119.783