Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04895 ATGGCAGTTATATCTCTCTCTCTTCTTCCACCACCACCTTCAACTCATTCTTGTTTCTGTTCCGGAATCAATCTCCGTTCACACAACAATTCTCTTTCAATTCATTCTCCTTCTTCTTTTCCTTCTACTTTCTCTAACTCTAATTCTAAATTCTCTTCTAGAAGAAAACGCTTTCACACTGTTTTCGCTGCTTCTTCTGATTACTATGCTACTCTCGGAGTTCCCAAATCCGCTACCGTTAAAGAAATCAAAGCCGCTTATCGAAGGTTAGCTCGTCAGTATCATCCTGATGTGAATAAGGAACCTGGAGCAACTGATAAGTTTAAAGAGATTAGTAATGCTTATGAGGTGCTATCAGATGACAAAAAGAGGTCTTTGTATGATCAATATGGCGAGGCAGGAGTTAAGAGTTCAGTGGGAGGAGGATCAAGTGCCTATGCGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGCGGCTTTGCTGGCATGGATCCAACTGGATTTGGCACACGGCGTCGTAGTACCGTTACGAAGGGTGAAGACATCCGGTATGACTTCTCCTTGGAGTTTTCTGATGCAATTTTCGGAACAGAGAAAGAATTTGAGCTCTTACATTTAGAGACATGTGAAGTCTGTACTGGTACTGGTGCAAAGTTAGGCTCCAAGATGAGAGTATGTTCAACTTGTGGTGGCAGGGGTCAAGTGATGAGGACCGAACAAACACCTTTTGGTTTGTTCTCACAGGTTTCAGTATGTCCAAATTGTGGGGGTGATGGTGAAGTCATATCTGAAAGTTGTCGTAAATGCAGCGGTGAAGGACGCATACGCGTTAAGAAGACTATGAAAGTTAAAGTTCCTCCTGGGGTTAGCTCAGGCAGTATTTTAAGAGTCACTGGAGAAGGTGATGCTGGACCAAGAGGGGGTCCTCCAGGAGATCTTTATGTATATCTTGACGTGCTTGAGATACCAGGAATTCAAAGAGACGACATTAATCTCCGCTCAACAATTTCAATAAATTATCTAGAGGCTATACTGGGGTCTGTAGTGCAGGTAAAGACGGTTGAAGGCACTTCTGAACTACAAATCCCTGCTGGTACTCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAGGGGGTACCAAAACTAAACAGACCATCAATACGTGGTGACCACTTATTTACTGTTAAAGTTACAATACCAAAACGTATTAGTCCAAAGGAGCGTGAGGTGCTTGAAGAACTTGCTTCTCTAGGTGACCCAAGCAGTCATTCAAGATCCCGTCCTAGGACCCAATCTTCCGCAGGAAGTAAGGAAAGTGCTGCAGCTCAAATGGCCGAAAGTCCAACAGCAACAGTTACAGAAACACCAGAGAACTCAGAAAACCAAGATGACTTATGGAGTAAACTAAAGAACGTGGCTGGGTCTGTGGCAAATGGAGCTCTAAAGTGGTTTAAAGATAATCTTTAG 1482 0.4325 MAVISLSLLPPPPSTHSCFCSGINLRSHNNSLSIHSPSSFPSTFSNSNSKFSSRRKRFHTVFAASSDYYATLGVPKSATVKEIKAAYRRLARQYHPDVNKEPGATDKFKEISNAYEVLSDDKKRSLYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSDAIFGTEKEFELLHLETCEVCTGTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISESCRKCSGEGRIRVKKTMKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVYLDVLEIPGIQRDDINLRSTISINYLEAILGSVVQVKTVEGTSELQIPAGTQPGDVLVLARKGVPKLNRPSIRGDHLFTVKVTIPKRISPKEREVLEELASLGDPSSHSRSRPRTQSSAGSKESAAAQMAESPTATVTETPENSENQDDLWSKLKNVAGSVANGALKWFKDNL 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04895 493 Gene3D - 214 278 - -
Trre11g04895 493 SMART dnaj_3 66 123 IPR001623 -
Trre11g04895 493 Gene3D DnaJ domain 63 169 IPR036869 -
Trre11g04895 493 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Trre11g04895 493 PRINTS DnaJ domain signature 103 123 IPR001623 -
Trre11g04895 493 PRINTS DnaJ domain signature 87 102 IPR001623 -
Trre11g04895 493 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trre11g04895 493 PRINTS DnaJ domain signature 123 142 IPR001623 -
Trre11g04895 493 Pfam DnaJ domain 67 128 IPR001623 -
Trre11g04895 493 CDD DnaJ 67 120 IPR001623 -
Trre11g04895 493 MobiDBLite consensus disorder prediction 424 469 - -
Trre11g04895 493 SUPERFAMILY HSP40/DnaJ peptide-binding domain 331 416 IPR008971 GO:0006457|GO:0051082
Trre11g04895 493 FunFam Chaperone protein dnaJ A6 chloroplastic 214 278 - -
Trre11g04895 493 Gene3D - 184 320 - -
Trre11g04895 493 Pfam DnaJ central domain 214 278 IPR001305 GO:0031072|GO:0051082
Trre11g04895 493 FunFam Putative Mitochondrial DnaJ chaperone 271 320 - -
Trre11g04895 493 SUPERFAMILY Chaperone J-domain 63 173 IPR036869 -
Trre11g04895 493 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 39 431 - -
Trre11g04895 493 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 324 IPR008971 GO:0006457|GO:0051082
Trre11g04895 493 FunFam Molecular chaperone Hsp40/DnaJ family protein 330 422 - -
Trre11g04895 493 CDD DnaJ_C 185 408 - -
Trre11g04895 493 MobiDBLite consensus disorder prediction 419 469 - -
Trre11g04895 493 NCBIfam molecular chaperone DnaJ 67 421 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre11g04895 493 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 281 IPR036410 -
Trre11g04895 493 Pfam DnaJ C terminal domain 187 405 IPR002939 -
Trre11g04895 493 ProSiteProfiles Zinc finger CR-type profile. 201 283 IPR001305 GO:0031072|GO:0051082
Trre11g04895 493 Gene3D - 330 422 - -
Trre11g04895 493 Hamap Chaperone protein DnaJ [dnaJ]. 64 477 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre11g04895 493 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Trre11g04895 493 CDD DnaJ_zf 214 278 IPR001305 GO:0031072|GO:0051082
Trre11g04895 493 FunFam Chaperone protein dnaJ A6 chloroplastic 64 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04895 Trre-Chr11 59834811 59842324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04895 68 174 C2H2 Transcription Factor Family AT1G74250 36.842 2.08e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04895 K03686 - gmx:100798567 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04895 11 59834811 59842324 Trre11g04895 11 59834811 59842324 ECH