Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04891 ATGGTTGATGAGAATGATTTAGGGAAGCTTCTTGTTCCGGTTTTGGGATTTCCATTTCCAATGTGTCTATCTGAACATCAAACCCCAGGTTTTGTTTGCGCCGTCGTCGACAACATGGCGCGTTTTGTCATCGTTCACAACGACAGCAGAGATACCACTCAATCTCATAGTTATGGTCCTAATGCCTTTACGCTACACAGGTTGCCGGTTCCCATGCCGGGGCAAGTGCTTGGTTTGGTTGGGGTAAATGGAATTGGAAAATCCACTGCACTTAAGATTTTGGCTGCAAAACTGAAGCCTAACTTGGGTCGTTTAACAGACCCCCCTGATTGGGAGGAAATTTCGATCTTTTTTCGAGGAACTGAATTGCATAATTACTTTACTGGCATTCTAGAGGATGGTTTCAAGCCTCTCATCAAGCCTCGGTATGTTGACCTAATTCCACGCACTGTGCAAGGGAATGTGGGGCAGCTGCTAGACCAAAGAAATGAGAGAGATATGATGGAAAGGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGTGATCTTTCAGGGGGTGAGCTCCAAAGGTTAGCCATTGCAGTTGTTGCCATCCAAAATGCTGAAATATACATGTTTGATGAACCTTCCAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCTCAAGTTGTTCGGTCATTGCTCAGGCCTAATAACTATGTAATTGTTGTCGAGCACGATCTTAGTGTTTTGGACTACTTATCAGACTTTATTTGCTGTTTGTATGGCAAACCTGGTGTATACGGTGTTGCAACACTCCCTTTCTCAGTCATAGAAGGAATTAATATCTTCTTGTCCGGCTTTAATCCATCAGAAAGTCTTAGGTTTCGGGAGGTCTCTTTTACTTTCAAGGTTGCAGAGACTCCGCAGGAAACTGCTGAGGAAGCTCAAACTTATGCTCGATTCAAATACCCAACCATGACTAAAACTCAAGGCAATTTCAGGCTTCATGCAGTTGAAGGAGAATTTACAGATTCACAGATTATTGTGTTGCTGGGCGAGAATGGGACAGGAAAGACAACATTCATTCGTATGCTGGCTGGTTTGTTGAAACCCGATACTATAGAAGGTGGATCTGATGTGGAGATGCCCGAGTTCAACGTATCATACAAACCTCAGAAAATTAAACATAGAATCGAATTATCTGTTAGACACTTGCTACGTCTAAAAATCTGTGATGCATATACGGATCCCCAGTTTATATCAGATGTGATGGAGCCACTACTTATTGAACAGTTGATGGACAAAGAGGTTCAGAATCTTTCTGGTGGAGAGTTGCAAAGAGTAGCTTTATGCCTTTGTCTTGGAAAGCCTGCAGACATCTATCTAATAGATGAGCCAAGTGCGTATCTTGATTCGGAACAGCGTATTATTGCTGCAAAAGTCATCAAGAGGTTTATTCTTCATGCAAAGAAAACAGCCTTTATCGCGGAGCATGATTTCATCATGGCAAATTATCTTGCTGACAGAGTTATCGTTTACGAGGGTCAACCTTCAATTGATTGTACTGCAAATTGTCCACAATCATTCCTTACTGGGATGAACCTTTTCTTATCTCATCTTGATATCACATTTAGAAGAGACCCAACTAATTTCTGCCCAAGGATCAACAAACTTGGATCAACAAAGGACAGAGAGCAAAAGAATGCTGGGACTTATTATTACCTTGATGACTGA 1734 0.4187 MVDENDLGKLLVPVLGFPFPMCLSEHQTPGFVCAVVDNMARFVIVHNDSRDTTQSHSYGPNAFTLHRLPVPMPGQVLGLVGVNGIGKSTALKILAAKLKPNLGRLTDPPDWEEISIFFRGTELHNYFTGILEDGFKPLIKPRYVDLIPRTVQGNVGQLLDQRNERDMMERLCADLELNQVIDRNVGDLSGGELQRLAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNNYVIVVEHDLSVLDYLSDFICCLYGKPGVYGVATLPFSVIEGINIFLSGFNPSESLRFREVSFTFKVAETPQETAEEAQTYARFKYPTMTKTQGNFRLHAVEGEFTDSQIIVLLGENGTGKTTFIRMLAGLLKPDTIEGGSDVEMPEFNVSYKPQKIKHRIELSVRHLLRLKICDAYTDPQFISDVMEPLLIEQLMDKEVQNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIIAAKVIKRFILHAKKTAFIAEHDFIMANYLADRVIVYEGQPSIDCTANCPQSFLTGMNLFLSHLDITFRRDPTNFCPRINKLGSTKDREQKNAGTYYYLDD 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04891 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 260 IPR027417 -
Trre11g04891 577 Gene3D - 306 575 IPR027417 -
Trre11g04891 577 FunFam ATP-binding cassette sub-family E member 1 307 575 - -
Trre11g04891 577 FunFam ABC transporter E family member 2 71 303 - -
Trre11g04891 577 Coils Coil 158 178 - -
Trre11g04891 577 Gene3D - 32 303 IPR027417 -
Trre11g04891 577 Pfam ABC transporter 336 468 IPR003439 GO:0005524
Trre11g04891 577 PRINTS ABC transporter family E signature 78 103 IPR013283 -
Trre11g04891 577 PRINTS ABC transporter family E signature 111 127 IPR013283 -
Trre11g04891 577 PRINTS ABC transporter family E signature 127 153 IPR013283 -
Trre11g04891 577 PRINTS ABC transporter family E signature 50 70 IPR013283 -
Trre11g04891 577 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 45 286 IPR003439 GO:0005524
Trre11g04891 577 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 293 540 IPR003439 GO:0005524
Trre11g04891 577 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Trre11g04891 577 ProSitePatterns ABC transporters family signature. 440 454 IPR017871 GO:0005524|GO:0016887
Trre11g04891 577 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 48 577 IPR013283 -
Trre11g04891 577 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 333 514 IPR027417 -
Trre11g04891 577 SMART AAA_5 73 265 IPR003593 GO:0016887
Trre11g04891 577 SMART AAA_5 344 518 IPR003593 GO:0016887
Trre11g04891 577 Pfam ABC transporter 73 215 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04891 Trre-Chr11 59808955 59815272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04891 68 250 Calmodulin-binding Proteins AT2G36910 26.738 9.80e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04891 K06174 - gmx:100797423 889.026