Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04877 ATGGCAAGAGGTTCATTGGATAAATGGATCTTCAAAAACAGTGAAAACACTTTGTTGTTAACTTGGGAAACAAGGTACAACATTGCAATAGGAAATGCAAAAGGATTGGCCTATCTTCATGAAGAGTGTGAAGTTAGGATCATTCATTGTGATATCAAACCACAAAATGTTCTTCTTGATGATAACTTCATGGCTAAGGTTTCGGATTTTGGATTGGTGAAACTAATGAGCCGAGAACAAAGCCATGTTTTCACAACTCTTAGAGGAACAAGAGGTTATTTAGCATCGGAATGGATAACTAACTACGCGATTTCGGAGAAGAGTGATGTGTTTAGCTATGGAATGCTTTTGCTTGAGATTATTGGTGGAAGGAAAAACTATGATCAATGGGAAGGACCCGAAAAAGCGCATTTTCCTTCTTATGTATCAAGAATGATGGAGGAAGGAAAAATAAGAGAAGTTATTGATCAAAAGATAGATATTGATGAGAATGATGAAAGTGTTGTGACTGCTCTTAAAGTTGCTCTTTGGTGTATACAAGATGACATGAATTTGAGACCTTCCATGAGTAATGTTGTTCAAATGCTTGAAGGTTTGTGTCAAGTGAATGATCCACCATTGTTACAATCAAGTACCTATTCAGCTTATTTGAAAATGAGTAGTGGAGAAGCTAGTTCATCAGGACAAGCTAGTTTTTATAGTAATGTGCCTTTGTCTTGTGTTCAATTATCAGGACCAAGATGA 744 0.3642 MARGSLDKWIFKNSENTLLLTWETRYNIAIGNAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFMAKVSDFGLVKLMSREQSHVFTTLRGTRGYLASEWITNYAISEKSDVFSYGMLLLEIIGGRKNYDQWEGPEKAHFPSYVSRMMEEGKIREVIDQKIDIDENDESVVTALKVALWCIQDDMNLRPSMSNVVQMLEGLCQVNDPPLLQSSTYSAYLKMSSGEASSSGQASFYSNVPLSCVQLSGPR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04877 247 Gene3D Transferase(Phosphotransferase) domain 1 1 212 - -
Trre11g04877 247 FunFam S-receptor-like kinase 5 1 205 - -
Trre11g04877 247 Pfam Protein kinase domain 20 194 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04877 247 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 1 207 - -
Trre11g04877 247 ProSiteProfiles Protein kinase domain profile. 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04877 247 SMART serkin_6 1 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04877 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 47 59 IPR008271 GO:0004672|GO:0006468
Trre11g04877 247 SUPERFAMILY Protein kinase-like (PK-like) 1 197 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04877 Trre-Chr11 59696146 59696889 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04877 5 206 Receptor kinase-like Gene Family AT5G20050 49.302 3.69e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre11g04877 Pkinase 8.7e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04877 - - psat:127087581 461.84