Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04829 ATGGAAGCCAATGGCAATGTGAAGCTCAAAACTCAGCTATGCAGAAAATTCATGATGCAAGGAACTTGTAATCTTGGAACCAAATGCAACTATGCACATGGCTACTCTGAACTCAGAGAATCACCAAAACTCTGCAGAATGTTCTCATCCAACAGACAATGCAGCTTTGGAAACAACTGTCGTTTCCTCCATTCAGCTCCTCATCATGAGTCTGCTGCAATAAACCTCACTCCACAACCACAACAAGGGACAGTGCAGAATGCAGGATGGAGGACCATGGAAACTGCTGCAATTAACGATGGTTCGTCTTCTGCACAAAACAAGAGGCCTAAAACTTCTACTGATCCTGCTACAAATGACCCAGCCAGCGGTAGCACGGTGGCCACAACCAAGTTGCATGTAAGGGGACCCTATGCTGGGAAAAGCAGGTTCGACAAAGAGGCCATGAAAGGGGTCATCGGCAAATATGGTGATTGGCTTTAA 483 0.4617 MEANGNVKLKTQLCRKFMMQGTCNLGTKCNYAHGYSELRESPKLCRMFSSNRQCSFGNNCRFLHSAPHHESAAINLTPQPQQGTVQNAGWRTMETAAINDGSSSAQNKRPKTSTDPATNDPASGSTVATTKLHVRGPYAGKSRFDKEAMKGVIGKYGDWL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04829 160 ProSiteProfiles Zinc finger C3H1-type profile. 39 67 IPR000571 GO:0046872
Trre11g04829 160 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 10 34 IPR000571 GO:0046872
Trre11g04829 160 SUPERFAMILY CCCH zinc finger 7 39 IPR036855 GO:0046872
Trre11g04829 160 FunFam zinc finger CCCH domain-containing protein 15-like 3 41 - -
Trre11g04829 160 SUPERFAMILY CCCH zinc finger 42 67 IPR036855 GO:0046872
Trre11g04829 160 ProSiteProfiles Zinc finger C3H1-type profile. 8 36 IPR000571 GO:0046872
Trre11g04829 160 SMART c3hfinal6 39 66 IPR000571 GO:0046872
Trre11g04829 160 SMART c3hfinal6 8 35 IPR000571 GO:0046872
Trre11g04829 160 MobiDBLite consensus disorder prediction 95 130 - -
Trre11g04829 160 Gene3D - 3 41 - -
Trre11g04829 160 Gene3D - 42 70 - -
Trre11g04829 160 PANTHER CCCH ZINC FINGER/TIS11-RELATED 9 110 IPR045877 GO:0003729
Trre11g04829 160 MobiDBLite consensus disorder prediction 95 134 - -
Trre11g04829 160 Pfam CCCH-type zinc finger 43 64 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04829 Trre-Chr11 59406044 59408064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04829 10 70 C3H Transcription Factor Family AT1G68200 39.706 2.13e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre11g04829 zf-CCCH 1.8e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04829 - K15308 cam:101493245 147.132