Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04792 ATGACACTCAAAAGCTTTGCATCACTTGTCTTCAATTTAATTGGCCTGGAAGATTCACAAACAAACAAGGATGCAACTATACCTTCTTACACTGTTGCTACCTCAATTGATCAAAAGAAGATCAATCAATCAACAATCAACAATGATGTTGGTTTATGTTGTGTGAGTTTGTCAATGTTAAATAACAAAGATGAAATTCGTGTACTTCCTTGTTTGCATGAATTTCATGAGGTTTCTGTAAATAGTTGGCTAAATGGTCATAAAAAAACATGTCCATTATGTCGTTTTTCAGTGGGAGCTGAAGAAAAGTCTCATCATGCTGAAATGTTCAGTGATGAGATACTAATATGGTTTTCTTCTTTCCATATAACTGGTATGTAA 381 0.336 MTLKSFASLVFNLIGLEDSQTNKDATIPSYTVATSIDQKKINQSTINNDVGLCCVSLSMLNNKDEIRVLPCLHEFHEVSVNSWLNGHKKTCPLCRFSVGAEEKSHHAEMFSDEILIWFSSFHITGM 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04792 126 Pfam Ring finger domain 53 95 IPR001841 -
Trre11g04792 126 SUPERFAMILY RING/U-box 38 100 - -
Trre11g04792 126 SMART ring_2 53 94 IPR001841 -
Trre11g04792 126 PANTHER TARGET OF ERK KINASE MPK-1 36 103 - -
Trre11g04792 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 101 IPR013083 -
Trre11g04792 126 ProSiteProfiles Zinc finger RING-type profile. 53 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04792 Trre-Chr11 59138414 59138794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04792 40 95 C3H Transcription Factor Family AT5G45290 40.351 3.66e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04792 - - gmx:100809233 155.992