Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04790 ATGAGGAAGAGTGTTAGTTTGAAAGCTGGAGAGGTTTCGAGTAGACTGACTCGTGCTCAAGCTGCTGCTTTAAGTGCAACTGGACAGTTGCCACCATTGAAGGAGTTATCACAAGAAAATCAGAAGCATCCCTTAGTAACCAATTCAAAAAGAGCAGTTTCAGATGTTACACATCTTCCTCATAAGAAGAGGGCAATTCTTCAGGATGTTACTAACATTTGCTGTGAAGTTCAGGCTAAGAAACGCAAGCTGGCTAAGCCTGCTCAACCACCAGTTGCTATAGAGATATCGCAATTTGTAGCTGACTCAAAACCCCTGAGTTCAAGGGAAATGCGGCTTAGATCATCAGAAGATATCATGTGCTTAGTTAGTTCAGAAGACAATGCACTTGTTAGGCTGAGTACCAACCAATGTGGCACAAATAATAATCTGCTTCACAGTCAGACTTCTCAAATATCTGCTCGGCCTTTGATTTCTCAAAAGAAAGCTTCACAAACTTTTGCAGCCAAGAAAGGCAACTATGCTGAAATTCTTGATGTGTCGAAGCATCCAGATGTTGTTGACATAGACGCTGATTTTGAAGATCCTCAACTTTGCAGCCTCTATGCTGCTGATATATATGACCACTTTCGTGTTGCTGAGCTGTCAAGAAGGCCTTGTCCTAACTTCATGGAAACAGTACAACAAGATATCACTCCAAGCATGCGTGCAATACTCGTTGATTGGCTTGTTGAGGTTTCTGAGGGATACAAATTGCAAGCAAACACTCTTTACCTCACTGTATATCTCATCGATTGGTTTCTCTCCAAAAATCACATTGAAAGACAGAGGCTTCAGCTACTTGGCATCACTTGCATGCTAATTGCTTCGAAGTACGAAGAAATTAACGCCCCTCGTGTTGAAGACTTCTGCTTTATCACAGAGAACACATACACAAAAGAGGAGGTACTGAAAATGGAGTCTCTAGTGTTGAAGTCCTCGGCATATCAACTATTTGCTCCCACTACAAAAACTTTCTTGAGGAGGTTTCTTCGAGCGGCACAAGCTTCTTACAAGAGACCTAGCATTGAATTGGAGTACTTGGCAAATTACCTGGCAGAACTAACACTAATGAACTATGGTTTCTTAAATTTCCTTCCTTCTATGATTGCTGCATCTGCCGTATTTCTCGCAAGATGGACGTTGGACTCGTCAAACCATCCATGGAATCCAACTCTTGAGCATTATGCCTCTTACAAAGCACCAGATTTGAAAGCCACAGTTCTTGCATTACAAGATCTACAGTTGAATAACAATGACTGTCCTTTAACTGCGATCCGCATGAAGTATTCACAAGACAAGCTCAAATGTGTAGCAGCTTTATCTTCAACAAAACTACTTGAAGCAATGTTCTGA 1395 0.4151 MRKSVSLKAGEVSSRLTRAQAAALSATGQLPPLKELSQENQKHPLVTNSKRAVSDVTHLPHKKRAILQDVTNICCEVQAKKRKLAKPAQPPVAIEISQFVADSKPLSSREMRLRSSEDIMCLVSSEDNALVRLSTNQCGTNNNLLHSQTSQISARPLISQKKASQTFAAKKGNYAEILDVSKHPDVVDIDADFEDPQLCSLYAADIYDHFRVAELSRRPCPNFMETVQQDITPSMRAILVDWLVEVSEGYKLQANTLYLTVYLIDWFLSKNHIERQRLQLLGITCMLIASKYEEINAPRVEDFCFITENTYTKEEVLKMESLVLKSSAYQLFAPTTKTFLRRFLRAAQASYKRPSIELEYLANYLAELTLMNYGFLNFLPSMIAASAVFLARWTLDSSNHPWNPTLEHYASYKAPDLKATVLALQDLQLNNNDCPLTAIRMKYSQDKLKCVAALSSTKLLEAMF 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04790 464 PANTHER CYCLINS 151 449 IPR039361 -
Trre11g04790 464 FunFam Cyclin A1 321 453 - -
Trre11g04790 464 CDD CYCLIN_AtCycA-like_rpt2 334 447 - -
Trre11g04790 464 SUPERFAMILY Cyclin-like 334 457 IPR036915 -
Trre11g04790 464 FunFam Mitotic cyclin 6 219 319 - -
Trre11g04790 464 SMART Cyclin_C_2 334 457 IPR004367 -
Trre11g04790 464 SUPERFAMILY Cyclin-like 194 326 IPR036915 -
Trre11g04790 464 CDD CYCLIN_AtCycA_like_rpt1 195 330 - -
Trre11g04790 464 Pfam Cyclin, C-terminal domain 334 456 IPR004367 -
Trre11g04790 464 PIRSF Cyclin_A_B_D_E 3 463 IPR046965 GO:0016538|GO:0044772
Trre11g04790 464 Gene3D - 205 453 - -
Trre11g04790 464 Gene3D - 219 332 - -
Trre11g04790 464 Pfam Cyclin, N-terminal domain 205 326 IPR006671 -
Trre11g04790 464 SMART cyclin_7 241 325 IPR013763 -
Trre11g04790 464 SMART cyclin_7 338 426 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04790 Trre-Chr11 59125530 59128856 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04790 8 464 Core Cell Cycle Gene Families AT1G15570 50.540 8.28e-155 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04790 K06627 - gmx:100789757 581.637