Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04783 ATGGATGCTACTTCTTTGGAATCAAATAGCACCATCCAAACCGAACAACATCCTTTGCTGATGGAGCATCCAGAGAGCGGTAATGGACATCACCACATAATTGATGTTACAAGGAATGATGAAACTTTGTCTACATCATCTCATAATGATCAACACTCGGAAACACATTTACCGGTGATTGATAATCAACCGGCTGAGGGTACTGATGACTCCACTCATCAAACATTTTCATCTTCTGCATCTAGATTAGACTCTACATATTCCGCTCCATTGAGAAGTCGTGAGGGGTATGGTCGTCGCAGAACAAATCCATTGAACTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTGATTCAAATCATAGCATCTATTGTGGTTTTGTTGTTGTCGAGAAACGAAAAACCCCAAGCCCCACTGTTTGTGTGGGTTGTAGGTTATGCATCTGGGTGTATTGCCACACTTCCTATTCTTCATTGGCGTTTTCGAAACCGTAATCAAAGAACTGAACAACATACCTCTCAGCCATCTCAAGAAACTTCTGGAAGTAATCGTCTAGATCATTCTGAAACCACCATCTATGTTTCTCATGTTTCTGATGAGGAGAATGGTCATGCTACACAATCAGCTACAGGAAACACTATAATTCCTAGTGTCTTTACTTCTAGTCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTAGTAGGAATTGTTTGGATCTTTGGAGGTAACACCTCTTCTTCTGAGGCTCCACAATTATACAGGTTATGTATTGTGTTTCTTACTTTTAGCTGTATTGGATATGTTATGCCATTTATACTTTGTGCAACTATATGTTGCTGCCTACCTTGCATAATTTCTGCTTTGGATATTCGGGAGGATTTATCTCAAAATAGAGGAGCAACAGTAGAATCGATCAATTCTCTACCAGTCTACAAGTTCAAAATGAAGAACAATGAAAATGGTGTTGATCAGTATACCAACACAGCTTTAGAAGAATGCGGGGTTTTGGCTGCAGGGACAGAAAAAGAGCGAATACTCTCAGGAAAAGATGCTGTTTGCTGCATTTGCTTGGCAAAATATGCAGATAATGATGAACTTAGAGAGTTACCTTGCTCGCACGTATTTCATGTCCGATGTGTTGACAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAAAGTGAAGTTGGTGCCAGTAATTAA 1242 0.3977 MDATSLESNSTIQTEQHPLLMEHPESGNGHHHIIDVTRNDETLSTSSHNDQHSETHLPVIDNQPAEGTDDSTHQTFSSSASRLDSTYSAPLRSREGYGRRRTNPLNSGLWISVELVVTVIQIIASIVVLLLSRNEKPQAPLFVWVVGYASGCIATLPILHWRFRNRNQRTEQHTSQPSQETSGSNRLDHSETTIYVSHVSDEENGHATQSATGNTIIPSVFTSSLNGLVDHFKMALDCFFAVWFVVGIVWIFGGNTSSSEAPQLYRLCIVFLTFSCIGYVMPFILCATICCCLPCIISALDIREDLSQNRGATVESINSLPVYKFKMKNNENGVDQYTNTALEECGVLAAGTEKERILSGKDAVCCICLAKYADNDELRELPCSHVFHVRCVDKWLKINASCPLCKSEVGASN 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04783 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 412 IPR013083 -
Trre11g04783 413 MobiDBLite consensus disorder prediction 42 87 - -
Trre11g04783 413 SMART ring_2 365 405 IPR001841 -
Trre11g04783 413 SMART ringv_2 364 406 IPR011016 GO:0008270
Trre11g04783 413 SUPERFAMILY RING/U-box 356 410 - -
Trre11g04783 413 ProSiteProfiles Zinc finger RING-type profile. 365 406 IPR001841 -
Trre11g04783 413 MobiDBLite consensus disorder prediction 42 58 - -
Trre11g04783 413 MobiDBLite consensus disorder prediction 65 87 - -
Trre11g04783 413 FunFam E3 ubiquitin-protein ligase 348 413 - -
Trre11g04783 413 Pfam Ring finger domain 365 406 IPR001841 -
Trre11g04783 413 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04783 Trre-Chr11 59109737 59111583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04783 1 413 C3H Transcription Factor Family AT1G80400 52.955 1.20e-152 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04783 - - gmx:100819516 661.373