Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04772 ATGGGTATGAACTGCAACAGAGTAGAACACTTTCAAGAATCAAACATGAAAATCCAAACTGAGATTCCAATTCATCAAGTTCGTTTACCACCACAGAGAACATCACTCAAAAAACTCAAACACAGACTCTCTGAAATCTTCTTCCCTGATGATCCTTTACACCGTTTCAAAAACCAACCATGTTTCACCAAGTTTCTTCTTACCCTTCAATTTTTCTTCCCCATTTTCCAATGGGGTTCTCACTATAATCTCACCCTTCTCCGTTCTGATATCATCTCTGGTCTCACCATTGCTAGCCTCGCCATTCCTCAGGGAATCAGTTATGCAAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCGAGTTTTGTGCCTCCATTGATATATGCACTCCTTGGAAGTTCAAAACATCTTGGTGTTGGACCAGTTTCAATTGCATCTTTGGTTATGGGATCAATGTTGAGTGAGACTGTTTCTTTCACTCAAAATCCAACTCTTTATCTTCAATTGGCTTTCACTGCAACTTTTGTTGCTGGTTTATTCCAAGCTTCTCTTGGTATATTAAGGTTAGGATTTGTAATTGATTTTCTATCAAAGGCAACACTGGTCGGTTTCATGGCCGGTGCTGCTATCATCGTGTCACTACAACAATTGAAAGGGTTACTTGGAATTGTTCACTTTACTAACAAGATGCAAATAATTCCTGTATTGCTCTCTGTTTATAAGCAAAAAGATGAGTGGTCATGGCAAACTGTTGTTATGGGACTCGGCTTCTTGGCGTTCCTGCTTACAACAAGACACATTAGTTTGAGAAAACCGAAATTATTTTGGGCTTCGGCAGCTGCTCCTTTAACATCGGTCATTTTGTCAACCGTTTTAGTCTTTCTTCTTAGAAATAAGGCTCATCACATTTCAGTTATTGGGCACTTATCAAAGGGAGTTAATCCACCATCAGTAAACCTGTTATACTTCAATGGTCCTCACTTGGCTCTTGCTATCAAAACAGGCATTGTCACAGGGATCCTATCTCTCACGGAAGGAATTGCGGTAGGTAGAACATTTGCAGCACTTAAGAACTACCAAGTCGATGGAAACAAAGAAATGATGGCTATCGGTATTATGAACATAGCTGGCTCTTGTACTTCATGCTATGTCACAACAGGATCCTTTTCTCGATCGGCTGTTAACTTCAATGCTGGAGCACAGACAGCAGTTTCTAACATAATCATGGCTTCGGCTGTTTTAGTGACCCTTTTGTTTCTCATGCCTCTCTTCTACTATACGCCAACCGTTGTCTTAGCAACCATCATCATTGCCGCCGTGATTGGACTAATAGATTATCAAGCTGCGTATAAACTGTGGAAGGTTGACAAACTTGATTTCTTGGCCTGCATGTGCTCCTTTTTTGGTGTTCTCTTCATTTCCGTACCTTTAGGCCTCAGTATAGCGGTTGCCATATCAGTCTTAAAGATCCTACTTCATGTCTCTAGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACACAAATATTCCATAACATAAACCAATACAAAGAAGCTTTAAGAGTTCCCTCGTTTCTTATTTTGGCTATTGAGTCTCCGATCTATTTCGCTAATTCAACTTACCTTCGAGAGAGGATACTAAGATGGGTTCGAGAAGAGGAAGAACGTATAAAAGCAAATAATGGAAATGAATTGAAGTGCATAATTTTAGACATGACAGCTGTCACGGCAATAGACACAAGTGGTCTTGAAACTTTAGGTGAACTTAGAAAGGTGCTAGAACAGAGATCACTTCAGCTTGTGTTGGTAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATACGTCGAAAATTTTGGATACCTTTGGATTTAAAGGAGTCTATCTCACAGTAGGAGAAGCTGTGGCTGACATTTCCTCAGCCAATAAAGCTCAACCATGA 1950 0.4005 MGMNCNRVEHFQESNMKIQTEIPIHQVRLPPQRTSLKKLKHRLSEIFFPDDPLHRFKNQPCFTKFLLTLQFFFPIFQWGSHYNLTLLRSDIISGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPPLIYALLGSSKHLGVGPVSIASLVMGSMLSETVSFTQNPTLYLQLAFTATFVAGLFQASLGILRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQIIPVLLSVYKQKDEWSWQTVVMGLGFLAFLLTTRHISLRKPKLFWASAAAPLTSVILSTVLVFLLRNKAHHISVIGHLSKGVNPPSVNLLYFNGPHLALAIKTGIVTGILSLTEGIAVGRTFAALKNYQVDGNKEMMAIGIMNIAGSCTSCYVTTGSFSRSAVNFNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPTVVLATIIIAAVIGLIDYQAAYKLWKVDKLDFLACMCSFFGVLFISVPLGLSIAVAISVLKILLHVSRPNTLVLGNIPGTQIFHNINQYKEALRVPSFLILAIESPIYFANSTYLRERILRWVREEEERIKANNGNELKCIILDMTAVTAIDTSGLETLGELRKVLEQRSLQLVLVNPVGNVMEKLHTSKILDTFGFKGVYLTVGEAVADISSANKAQP 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04772 649 PANTHER SULFATE TRANSPORTER 36 641 IPR001902 GO:0016020|GO:0055085
Trre11g04772 649 FunFam Sulfate transporter 31 498 644 - -
Trre11g04772 649 Pfam STAS domain 519 637 IPR002645 -
Trre11g04772 649 CDD STAS_SulP_like_sulfate_transporter 519 634 - -
Trre11g04772 649 ProSiteProfiles STAS domain profile. 518 641 IPR002645 -
Trre11g04772 649 SUPERFAMILY SpoIIaa-like 524 640 IPR036513 -
Trre11g04772 649 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Trre11g04772 649 Pfam Sulfate permease family 87 467 IPR011547 GO:0016020
Trre11g04772 649 NCBIfam sulfate permease 74 637 IPR001902 GO:0016020|GO:0055085
Trre11g04772 649 Gene3D STAS domain 498 644 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04772 Trre-Chr11 58981769 58986989 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04772 1 649 Inorganic Solute Cotransporters AT3G15990 75.498 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04772 K17471 - gmx:100815251 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04772 11 58981769 58986989 Trre11g04772 11 58981769 58986989 ECH
Trre11g04772 11 58981769 58986989 Trre7g00290 7 1942236 1947534 PCT