Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04771 ATGAGTCGCGGTGGTGTTACCGGAGCTAAGGGAAAGAAGAAGACTGCAACCTTCACCATTGACTGTGCTAAACCAGTTGAAGACAAGATCATGGACATTGCTTCTCTTGAGAAGTTTCTTCAAGAGAGAATTAAGGTCGGTGGCAAAGCCGGTGCTCTTGGTGATTCAGTCACCGTTACCAGAGACAAGTCCAAGATCACTGTTACATCTGACAGTAACTTTTCCAAGAGATATTTGAAGTATTTGACAAAGAAATACTTGAAGAAACACAATGTAAGAGACTGGCTCAGAGTGATTGCTTCAAACAAAGATAGGACTGTCTATGAGTTGAGGTACTTCAACATTGCCGAGAACGAGGGAGAGGAAGATTAA 372 0.4247 MSRGGVTGAKGKKKTATFTIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRTVYELRYFNIAENEGEED 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04771 123 FunFam 60S ribosomal protein L22-2 5 123 - -
Trre11g04771 123 Gene3D - 6 123 IPR038526 -
Trre11g04771 123 Pfam Ribosomal L22e protein family 13 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
Trre11g04771 123 PANTHER 60S RIBOSOMAL PROTEIN L22 6 122 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04771 Trre-Chr11 58977467 58978221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04771 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 85.366 1.98e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04771 K02891 - csav:115723248 212.616