Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04768 ATGGATGACATTGAGGATGATGCAATTGGAAGTTATCCCCCAAACCCTAACAATCAAGGTTATGGTTATATGAAACATCCTTTGAGGAATTCTTCATATTCCCATCCGGTTGCGAATGAATCTGCCCGAGATTATAATGATGTTGTTGCTGTTGATGATGATGACGATGTTGTTGTTGAAGATGAAGACCGGTTAGGAGGGGAAGATGATATTGTTGACGTTGTTGATGACGATGATGATGTTGATCGAAATAGGAGTGTTCAAAATTCCTTGAACCAGGTTGATGAAGATGGTGACATGGATGGAGATGGGGATGGTGATGAAAATGATGATAACAATAGTGATGATAATGACCAACAGCAGAATGAGGAATACGGTTATGCGAAACATCCTGTGAGGAATTCACCATATTCTCAGTCATTTGCAAATGAAGGTAACAATGATGAGGATGAAGAAGATGAAGAGCGGTTAGTGGAGGAAGATGACGGGGATGGTGATGATGTTGATCAAATTAACAATGTTCAGCTTTCTCTAAAGCAAGTTGATGAAGAAGATAACTATGATGAGGATGGGGATAGGGATGGAAATGACAATGACGACGACAACGACGGTGATAATGACGATAAGCAGAAAAGTTATGCCATTATGAATAATGAAGATGAATTTGAGTGGCACCCAAAAAAACAAAAGCTGAAGAGTTTGATTTCAACCTATGAATTCGCAGCTCGGGTGCCTACACCATCTGCTGTAGCTACTCCAGCTACTAAACCATCCCCTGGGGTTAGAAATTCCCTTACTGAGTGGACTGAGAAGGAGACATTTGTTCTTCTTGATGCGTGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCTGATGAATGGCAAAAAGTTGCAGAAAAGGTATCAGAAGTTTCGAGAGTTGAAAGAACAGGTACTCAGTGTAGAAATCGTTTAGATACATTGAAGAAAAAGTATAAAAAGGACAAGATTAAGTTTTCAGAAATGGGTGGTGGAGATAAAAAATGGGTTTATTTTAAAAAGATGGATAAGCTAATGTCTTCTCCACCACAACAGGCAGGTTTCTCTTGTGGTCTGGATTCAAGAGAGAGTGCTTTCATGAAGCCCAAAGTTTATGCAAATCATGCAAATGGGTTGGATGACATGAAAGATAGTCCTGAGAATACTGAATCCGTCGGTGTAGAAAGTTCAAATGGACCTCGCACAAAGAAAAGAAGGAAGGGAAGGAGCGGTGGTGAGGATTCTTCCTTCAAATTACTTGCTGATTCCATTCATAATTTTGGCAAGATATATGAGAAGATTGAAAATAGTAAAAGGCAGAAGATGCTGGAACTGGAGAAGATGAGGATGGATTTCCTCAATGATTTGGAAATACAAAAGAGACAGATTTTTGAAAAATTGCAGAGTGAGATTTTGAAACTAGAGCGAAGAGATGATTAG 1467 0.3954 MDDIEDDAIGSYPPNPNNQGYGYMKHPLRNSSYSHPVANESARDYNDVVAVDDDDDVVVEDEDRLGGEDDIVDVVDDDDDVDRNRSVQNSLNQVDEDGDMDGDGDGDENDDNNSDDNDQQQNEEYGYAKHPVRNSPYSQSFANEGNNDEDEEDEERLVEEDDGDGDDVDQINNVQLSLKQVDEEDNYDEDGDRDGNDNDDDNDGDNDDKQKSYAIMNNEDEFEWHPKKQKLKSLISTYEFAARVPTPSAVATPATKPSPGVRNSLTEWTEKETFVLLDAWGDRFLQHGRKSLRSDEWQKVAEKVSEVSRVERTGTQCRNRLDTLKKKYKKDKIKFSEMGGGDKKWVYFKKMDKLMSSPPQQAGFSCGLDSRESAFMKPKVYANHANGLDDMKDSPENTESVGVESSNGPRTKKRRKGRSGGEDSSFKLLADSIHNFGKIYEKIENSKRQKMLELEKMRMDFLNDLEIQKRQIFEKLQSEILKLERRDD 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04768 488 Pfam Myb/SANT-like DNA-binding domain 267 354 IPR044822 -
Trre11g04768 488 MobiDBLite consensus disorder prediction 145 168 - -
Trre11g04768 488 ProSiteProfiles Myb-like domain profile. 268 325 IPR001005 -
Trre11g04768 488 Gene3D - 268 330 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 1 221 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 205 221 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 49 77 - -
Trre11g04768 488 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 254 486 IPR044823 -
Trre11g04768 488 FunFam trihelix transcription factor ASIL2 268 330 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 96 118 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 386 425 - -
Trre11g04768 488 Coils Coil 440 460 - -
Trre11g04768 488 MobiDBLite consensus disorder prediction 183 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04768 Trre-Chr11 58966504 58967970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04768 410 486 Trihelix Transcription Factor Family AT3G14180 38.961 2.67e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre11g04768 Myb_DNA-bind_4 9.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04768 - - psat:127087507 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04768 11 58966504 58967970 Trre11g04768 11 58966504 58967970 ECH