Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04753 ATGGGTAAGGGTACCGGAAGTTTCGGTAAGAGAAGGAACAAGACTCACACACTCTGTGTGAGGTGCGGCCGCCGCAGTTTCCACCTCCAGAAAAGTCGATGCTCCGCCTGTGCATACCCTGCTGCTCGTGTCAGGAAATATAACTGGAGTGAAAAGGCAATCCGTAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGCGTAACGTTCCTCGCCGATTCAAGAGTGGCTTCAGAGAGGGAACTGAAGCTGCACCTAGGAAGAAGGGAGGAGCTGCAACTGCTTAA 288 0.5208 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRKKGGAATA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04753 95 FunFam Ribosomal protein L37 1 88 - -
Trre11g04753 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Trre11g04753 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Trre11g04753 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Trre11g04753 95 MobiDBLite consensus disorder prediction 71 95 - -
Trre11g04753 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Trre11g04753 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Trre11g04753 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04753 Trre-Chr11 58883090 58883979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04753 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 87.368 6.24e-57 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04753 K02922 - gmx:100527725 191.815