Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04742 ATGAGAGGATCAAATTTGAACATTGGTGTGACAATGAAGAGGAAGAAGGCTATAAAATCTGAACAACATGAGCCTTCAAATTTCAAGACACCTCTTAACATCAATCACGCTAAGAATGATTCGATTTGTGGGTTGAAGGTGCAAGAACATGATGAATTTCTCACCCCTTCAATGGCCTTTTCATGCATCTTTTGCCATAGAAAATTTTCTTCTAAAAGAGCTTTAGGAGGACATCGAAGGGTTCATAAGACAGAGCGTGAAAATCATCATCAAGAAAATAACAAGGTTGTTAAAATGAAGGGAAAGGAAATTGTACAATCCGAACAATATCAACATTCATCCTATACAATGCCTATTTACATTGATCTTACCACGAATGATTTAAGAGGACACGAAAAGTCTCATAAGCGAGAGCGCGAAATACATGATCAAGAGAACAAAAATAACAACTACAAGAAGGTGGTGACAATGAAGGGAAAGGAAGTTGTCAAATTTGAACAATATCAACATTCAAACTCCATGATACTTGTTCCTATCATCGATCTCACAAATAATGAGTCAAAGACTTTTTCATGCAAAATTTGCAATAAATCGTTCTCTTCTGCCCGAGCTTTAGGTGGACACAAAAAGGCTCATAAGCACAAACCCACACTTGCAAAGCATCCTCAAGAGATGGAAAACTTTTCTTCTATTCATGGAATTAAAATTGAAGATATTTCGATAAAATTAGAAGATAATGTTGGAGAGTCTTCTATAAATGTTGATAAGAAGTCAAACTCAGTACTCCACAAGTCAATCGCGGTTGCCACATGTGGTGATTATCATCATATTGTCAAGGAAGAACCGATCGAGCTTGATTTGTCTCTTAAACTTTGA 876 0.3607 MRGSNLNIGVTMKRKKAIKSEQHEPSNFKTPLNINHAKNDSICGLKVQEHDEFLTPSMAFSCIFCHRKFSSKRALGGHRRVHKTERENHHQENNKVVKMKGKEIVQSEQYQHSSYTMPIYIDLTTNDLRGHEKSHKREREIHDQENKNNNYKKVVTMKGKEVVKFEQYQHSNSMILVPIIDLTNNESKTFSCKICNKSFSSARALGGHKKAHKHKPTLAKHPQEMENFSSIHGIKIEDISIKLEDNVGESSINVDKKSNSVLHKSIAVATCGDYHHIVKEEPIELDLSLKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04742 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Trre11g04742 291 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre11g04742 291 Pfam C2H2-type zinc finger 190 213 - -
Trre11g04742 291 Pfam C2H2-type zinc finger 60 84 - -
Trre11g04742 291 Gene3D Classic Zinc Finger 171 246 - -
Trre11g04742 291 Gene3D Classic Zinc Finger 44 116 - -
Trre11g04742 291 SMART c2h2final6 60 82 IPR013087 -
Trre11g04742 291 SMART c2h2final6 190 212 IPR013087 -
Trre11g04742 291 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 49 119 IPR044246 GO:0009788
Trre11g04742 291 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Trre11g04742 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Trre11g04742 291 ProSitePatterns Zinc finger C2H2 type domain signature. 192 214 IPR013087 -
Trre11g04742 291 SUPERFAMILY beta-beta-alpha zinc fingers 181 228 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04742 Trre-Chr11 58827700 58828575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04742 183 233 C2H2 Transcription Factor Family AT5G25160 49.020 8.66e-09 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04742 zf-C2H2_6 6.9e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04742 - K09228 psat:127082596 73.559