Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g04741 | ATGGCTTCAATCTCTAATCCATCCTCTACCACTTCAGAAGATTCCCAAAAAAGTTGTGAAAAAGAGAACAACATCAACAACAAAGGGAAGGAAGTTGTGCAATATCAACAACATCAACCTCCAATCTCGAACACAAAGTTGCTTCTTGATATCATCAAGCAATCAAAAGATGATTCAATTCGCGGCTCGAAAGTGCAAGAGCGTGATTTTTTCACCCCCACAAAAAATTTCGAGGTTGGTTCATCTTCATTAAGTTGGTCTAATAATAAGACCAACAATGAAAAGAACACTGAGAATAAGTCCTCTGACTCGAAGACTTTTACTTGCACTTATTGCAGGAGACAGTTTTCTACTTCACAAGCTTTGGGAGGGCACCAAAATGCTCATAAGAGTGAGCGTGCACTCGCAAAACATCGTCAAGAGATCCATAATAATGGTGGCTTTGGGATCCCTCACCATCCTTATCCTTACTACACTAATTACCCTAGCCTTTCTTCATCTTATTATGGGTTTGGATCCTTTAATAATCCCCTTGGGATTAGGAGGGAGTCCATGATCCACAAGCCAAGCTATTCATTGACCCCACCTCCTTATAGGTTCGGTTCTACTCCTACTTGGACTTGGAACAATAATGCAAGGAGTGCAACTCCAACATGGACACCAATGCAAGAGATGAGGAACTTTTCTTCATTTGGTGGATTGAAGATTGAGGGTCTTAACACAAATAATGCAAGTAGTGCAACTCCAACTTGGTTGGATAATGTTGCTGCAAATAATGTTCATCATGGTGTGGAGAAGGAAGAAGACTCTGATTCAGAATCTACCGAACTTGATTTGACTCTTAGACTTTGA | 852 | 0.4049 | MASISNPSSTTSEDSQKSCEKENNINNKGKEVVQYQQHQPPISNTKLLLDIIKQSKDDSIRGSKVQERDFFTPTKNFEVGSSSLSWSNNKTNNEKNTENKSSDSKTFTCTYCRRQFSTSQALGGHQNAHKSERALAKHRQEIHNNGGFGIPHHPYPYYTNYPSLSSSYYGFGSFNNPLGIRRESMIHKPSYSLTPPPYRFGSTPTWTWNNNARSATPTWTPMQEMRNFSSFGGLKIEGLNTNNASSATPTWLDNVAANNVHHGVEKEEDSDSESTELDLTLRL | 283 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g04741 | 283 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 107 | 134 | IPR013087 | - | |
Trre11g04741 | 283 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Trre11g04741 | 283 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 109 | 129 | IPR013087 | - | |
Trre11g04741 | 283 | MobiDBLite | consensus disorder prediction | 81 | 95 | - | - | |
Trre11g04741 | 283 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 7 | 283 | IPR044246 | GO:0009788 | |
Trre11g04741 | 283 | MobiDBLite | consensus disorder prediction | 28 | 43 | - | - | |
Trre11g04741 | 283 | SUPERFAMILY | beta-beta-alpha zinc fingers | 103 | 134 | IPR036236 | - | |
Trre11g04741 | 283 | MobiDBLite | consensus disorder prediction | 81 | 104 | - | - | |
Trre11g04741 | 283 | Gene3D | Classic Zinc Finger | 81 | 146 | - | - | |
Trre11g04741 | 283 | MobiDBLite | consensus disorder prediction | 263 | 283 | - | - | |
Trre11g04741 | 283 | Pfam | C2H2-type zinc finger | 107 | 131 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g04741 | Trre-Chr11 | 58798208 | 58799059 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g04741 | 101 | 190 | C2H2 Transcription Factor Family | AT5G10970 | 45.652 | 7.53e-18 | 79.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre11g04741 | zf-C2H2_6 | 7.1e-06 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g04741 | - | - | tpra:123886838 | 270.781 |