Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04741 ATGGCTTCAATCTCTAATCCATCCTCTACCACTTCAGAAGATTCCCAAAAAAGTTGTGAAAAAGAGAACAACATCAACAACAAAGGGAAGGAAGTTGTGCAATATCAACAACATCAACCTCCAATCTCGAACACAAAGTTGCTTCTTGATATCATCAAGCAATCAAAAGATGATTCAATTCGCGGCTCGAAAGTGCAAGAGCGTGATTTTTTCACCCCCACAAAAAATTTCGAGGTTGGTTCATCTTCATTAAGTTGGTCTAATAATAAGACCAACAATGAAAAGAACACTGAGAATAAGTCCTCTGACTCGAAGACTTTTACTTGCACTTATTGCAGGAGACAGTTTTCTACTTCACAAGCTTTGGGAGGGCACCAAAATGCTCATAAGAGTGAGCGTGCACTCGCAAAACATCGTCAAGAGATCCATAATAATGGTGGCTTTGGGATCCCTCACCATCCTTATCCTTACTACACTAATTACCCTAGCCTTTCTTCATCTTATTATGGGTTTGGATCCTTTAATAATCCCCTTGGGATTAGGAGGGAGTCCATGATCCACAAGCCAAGCTATTCATTGACCCCACCTCCTTATAGGTTCGGTTCTACTCCTACTTGGACTTGGAACAATAATGCAAGGAGTGCAACTCCAACATGGACACCAATGCAAGAGATGAGGAACTTTTCTTCATTTGGTGGATTGAAGATTGAGGGTCTTAACACAAATAATGCAAGTAGTGCAACTCCAACTTGGTTGGATAATGTTGCTGCAAATAATGTTCATCATGGTGTGGAGAAGGAAGAAGACTCTGATTCAGAATCTACCGAACTTGATTTGACTCTTAGACTTTGA 852 0.4049 MASISNPSSTTSEDSQKSCEKENNINNKGKEVVQYQQHQPPISNTKLLLDIIKQSKDDSIRGSKVQERDFFTPTKNFEVGSSSLSWSNNKTNNEKNTENKSSDSKTFTCTYCRRQFSTSQALGGHQNAHKSERALAKHRQEIHNNGGFGIPHHPYPYYTNYPSLSSSYYGFGSFNNPLGIRRESMIHKPSYSLTPPPYRFGSTPTWTWNNNARSATPTWTPMQEMRNFSSFGGLKIEGLNTNNASSATPTWLDNVAANNVHHGVEKEEDSDSESTELDLTLRL 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04741 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 107 134 IPR013087 -
Trre11g04741 283 MobiDBLite consensus disorder prediction 1 43 - -
Trre11g04741 283 ProSitePatterns Zinc finger C2H2 type domain signature. 109 129 IPR013087 -
Trre11g04741 283 MobiDBLite consensus disorder prediction 81 95 - -
Trre11g04741 283 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 283 IPR044246 GO:0009788
Trre11g04741 283 MobiDBLite consensus disorder prediction 28 43 - -
Trre11g04741 283 SUPERFAMILY beta-beta-alpha zinc fingers 103 134 IPR036236 -
Trre11g04741 283 MobiDBLite consensus disorder prediction 81 104 - -
Trre11g04741 283 Gene3D Classic Zinc Finger 81 146 - -
Trre11g04741 283 MobiDBLite consensus disorder prediction 263 283 - -
Trre11g04741 283 Pfam C2H2-type zinc finger 107 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04741 Trre-Chr11 58798208 58799059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04741 101 190 C2H2 Transcription Factor Family AT5G10970 45.652 7.53e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04741 zf-C2H2_6 7.1e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04741 - - tpra:123886838 270.781