Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04739 ATGTGTGTTGTAGACATGTCCAATAATCCTCCTCCTTCCTCTTCTCGTGCCAAAGATTTCTTTCCCTCTCCAGCTCTCTCTCTTAGTCTTGCAGGAATTTTTCGGCATGGTGGGATGGCGGCGGAGGGTGAAGGGGCGAGTACAAGTAACATGGAGGTGGAGGAAGGGGAGGAGGGGAGTACCGTTGGAGGTGATCAACGCGTGGAGGAAATTAGTAGCGAATATTCCGGTCCAACGAAATCCAAATCAGAGGATGAATTTGAAGGAGATGAAGATGATGAAGGAGATGGTGATGGAGATAATAAACACAAGAAGAAAAAAAGAAAGAAATATCACAGGCACACTGCTGAACAGATCAGGGTCATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGAGACATGAAAATTCATTGTTGAAAAGTGAAATAGAGAAATTAAGAGAGAAAAATAAGACCCTAAGAGAGACCATAAACAAAGCATGTTGCCCCAATTGTGGAGTACCCACTACAAACAAAGATGGTACCATGCCAACTGAAGAACAACAACTACGTATTGAAAATGTCAAACTCAAAGCTGAGGTAGAGAAGCTACGAGCAGCTTTAGGGAAACATGCATTAGGGACAATGTCACCTTCATGTTCTACAAGCCATGACCAAGAGAATATTAAAAGTTCTTTGGATTTTTACACTGGAATTTTTGGTCTTGATGAATCAAGAATAATGGATGTAGTAAACCAAGCAATGGATGAGCTTATAAAGATGGCTACAATGGATGAACCATTGTGGCTACGTAGTTTAGAGACTGGTCGTGAAATACTTAATTATGATGAATATATGAAGGAGTTTGTAGTTGAAAATTCAGATAATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTCCAAGGATTGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCTGCAACAGTTGACATCATATGCAAAGGAGAAAGTTCTAACAAGAATGGTGCTGTCCAACTGATGTTTGCTGAGCTGCAAATGTTAACACCAATGGTTCCTACTAGAGAAGTGTATTTTGTCAGATACTGCAAAAAATTGAGTGGTGAAAAATGGGCAATTGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGATGCATCCCTCGTGAAGTGCAGAAAACGACCATCTGGTTGCATTATTGAGGATAAGTCAAATGGTCATTGCAAAGTAATATGGGTAGAGCACTTGGAGTGCCAAAAGAGTGCAGTTCATTCGATGTATCGCACCATTGTCAACAGTGGCTTAGCTTTTGGGGCGAGGCATTGGATTGCGACTCTTCAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCTATTAGTGCATCAAGCTTCCATACATGGACTAAGGTTACTAGTAAAACTGGAGAAGATATAAGAATTAGTTCTAGAAAGAATTTGAATGATCCTGGTGAACCTCTTGGATTGATACTTTGTGCAGTTTCTTCTGTATGGTTGCCTATATCTCCTAATGTTTTATTTGATTTCTTGAGGGATGAAGCTCGTCGTACGGAGTGGGACATCATGTCTAGTGGTGGGGCAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACAATCCAAACAATTAAATCTAAAGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAACTCTTATGAATCAATGGTGGTATATGCTCCTGTGGACATAACTGGTATTCAGTCTGTGATGACCGGATGCGATTCGAGCAATCTTGCCATACTTCCCTCGGGATTCTCAATTATTCCTGATGGTCTAGAGTCAAGGCCAATGGTTATCACTTCAAGGCAGCAAGAGAAAAACACAGATGGAGGATCTTTGTTTACAGTAGCATTCCAGATCCTTACAAATTCTTCTCCTACTGCCAAACTAACAATGGAGTCTGTGGACTCGGTCAACTCTCTTGTATCATGTACATTGAGACACATCAGAACAAGTTTAAATTGTGAAGATGGTTAG 2289 0.4059 MCVVDMSNNPPPSSSRAKDFFPSPALSLSLAGIFRHGGMAAEGEGASTSNMEVEEGEEGSTVGGDQRVEEISSEYSGPTKSKSEDEFEGDEDDEGDGDGDNKHKKKKRKKYHRHTAEQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREKNKTLRETINKACCPNCGVPTTNKDGTMPTEEQQLRIENVKLKAEVEKLRAALGKHALGTMSPSCSTSHDQENIKSSLDFYTGIFGLDESRIMDVVNQAMDELIKMATMDEPLWLRSLETGREILNYDEYMKEFVVENSDNGRPKRSIEASRDTGVVFADLPRIVQCFLDANQWKEMFPCLISKAATVDIICKGESSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKKLSGEKWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPISPNVLFDFLRDEARRTEWDIMSSGGAVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPMVITSRQQEKNTDGGSLFTVAFQILTNSSPTAKLTMESVDSVNSLVSCTLRHIRTSLNCEDG 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04739 762 CDD homeodomain 115 163 IPR001356 GO:0003677
Trre11g04739 762 CDD START_ArGLABRA2_like 273 500 - -
Trre11g04739 762 MobiDBLite consensus disorder prediction 1 22 - -
Trre11g04739 762 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Trre11g04739 762 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677
Trre11g04739 762 FunFam Homeobox-leucine zipper protein HDG1 94 181 - -
Trre11g04739 762 Coils Coil 215 235 - -
Trre11g04739 762 SMART HOX_1 107 169 IPR001356 GO:0003677
Trre11g04739 762 Pfam START domain 279 501 IPR002913 GO:0008289
Trre11g04739 762 Coils Coil 164 194 - -
Trre11g04739 762 SUPERFAMILY Bet v1-like 271 501 - -
Trre11g04739 762 Gene3D - 278 496 IPR023393 -
Trre11g04739 762 SUPERFAMILY Bet v1-like 530 753 - -
Trre11g04739 762 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Trre11g04739 762 SMART START_1 277 501 IPR002913 GO:0008289
Trre11g04739 762 MobiDBLite consensus disorder prediction 39 116 - -
Trre11g04739 762 Pfam Homeodomain 108 163 IPR001356 GO:0003677
Trre11g04739 762 SUPERFAMILY Homeodomain-like 97 166 IPR009057 -
Trre11g04739 762 Gene3D - 96 177 - -
Trre11g04739 762 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981|GO:0006355
Trre11g04739 762 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 758 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04739 Trre-Chr11 58781711 58789001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04739 71 761 Homeobox Transcription Factor Family AT1G79840 64.530 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre11g04739 START 2.6e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04739 K09338 - gmx:100809926 1261.13