Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04730 ATGATGGCTGGTAACCCTAACTGGTGGAACATGCATCCACCATCTTTGAATATCCCTCCTCAATATATGCTTGGATCTTCTTCAATCCCTTTCAATTCCTTGACTGAAAATTCTCAAGTACCTCCTCAATCATGGAGTCAACTACTTTTTACTGGAGTACCTGGAGAAGAAGAGAGGCTTGGTTTCAATCATTTTGAGCCAAAAAACTCAGAAAATTGGGATGTGCAAATTCTTAATCCATCTTCAAGAGTTCCTATTATGGATATAATAAAGCATGAAGTTTCTCAAAGTGAGAATTTCTATGGCCAACAAGGGCACACTCATCATCATCATCATGAGGAGTTTCATGCTAATAATTCTGGATCAATAGGTTCATCTTGGTCACATATGGTGCCAGTTTCTTCACCAAGTTCTCATGTCACTAGCTTAAGTAGTGATAATAATATGTTGGATTTCACTTATAACAAGCTAGATCATAGCAAGAATTTACTACAAGATCAAATATCTGAGTGTAATAGTTCCACTATTAATGGAGTCAATAAGAAGGCTAGGGTTCAGCCATCTTCATCAAGCCAACCACCTCTAAAGGTGAGGAAGGAGAAGCTAGGTGATAGAATAACAGCACTTCATCAGCTAGTTTCACCATTTGGAAAGACTGACACAGCTTCTGTATTATTAGAAGCCATTGGATACATTAGGTTTCTGCAGAGTCAAATTGAGGCACTAAGCTCTCCTTACTTGGACACTGCAGCATCAAAAAACATGATGAGGAATCAACATTCTGTGCATGTAGAAAGAAATTCTGTATTTCCTGAGGACCCCGGTCAGCTGTTGGATGACACTGGCCTAAAAAGAAAGGGTGCTCCTATTCCAAACCAGAATGCAGAATTAGCTAATAAGGCAAAGGATTTGAGGAGTAGAGGGTTATGTTTGGTTCCTGTGTCATGCACACAACATGTTGGAAGTGAAAATGGAGCTGATTATTGGGCACCAGCATTTGGAAGTGGATTTTAA 1014 0.3935 MMAGNPNWWNMHPPSLNIPPQYMLGSSSIPFNSLTENSQVPPQSWSQLLFTGVPGEEERLGFNHFEPKNSENWDVQILNPSSRVPIMDIIKHEVSQSENFYGQQGHTHHHHHEEFHANNSGSIGSSWSHMVPVSSPSSHVTSLSSDNNMLDFTYNKLDHSKNLLQDQISECNSSTINGVNKKARVQPSSSSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSSPYLDTAASKNMMRNQHSVHVERNSVFPEDPGQLLDDTGLKRKGAPIPNQNAELANKAKDLRSRGLCLVPVSCTQHVGSENGADYWAPAFGSGF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04730 337 CDD bHLH_AtbHLH_like 196 243 IPR045239 -
Trre11g04730 337 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 41 319 - -
Trre11g04730 337 Gene3D - 196 262 IPR036638 GO:0046983
Trre11g04730 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 196 247 IPR036638 GO:0046983
Trre11g04730 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Trre11g04730 337 FunFam Transcription factor bHLH123 family 196 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04730 Trre-Chr11 58704733 58708673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04730 1 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 37.746 1.17e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04730 - - gmx:100802121 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04730 11 58704733 58708673 Trre11g04730 11 58704733 58708673 ECH
Trre7g05738 7 62497056 62500692 Trre11g04730 11 58704733 58708673 PCT