Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04729 ATGTCTACACCATTAGAACATGATTACATAAGTTTGACAGATAATACTTCAATGGACAAATCATCTTCATCTCTCAACTTCAAGGAGACAGAGCTGAGACTAGGTCTACCTGGTTGTGAATCTCCTGACAGAAAACCAGTTATTGCTAGTGGTGGAGGAGTCTCTTTCTTTGGTAACAAGAATTTGAACATTAATGTTTGTTCTCCTATGAAGAATCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTTTGATGCTATTGATGATGAATCTTCTGGCAAATGGATTTTCTCTGTTAATGATGGATCTCAAGGTGGAGCTACTTTGTTTTCTCCTAGAGGAGAGAATGTTGGAAAATCTCTTGTTAGTTTAGAGACTCAAACTAATACTCAGAAGATTAATATAAATGCACCAAAAAATATCAATGAGATTCTTCACCAATCTGTGAAACCAGTAGTACATGAAAAGAATAAACAGGTTGATGGAACAAATGAGGATGCTAATGCTCCTGCTGCAAAGACACAGATTGTGGGATGGCCACCAATTCGATCGTTTCGAAAGAACACAATGGCATCAAATTTGACAAAGAGCAATGATGAAGCTGAGGGAAAACAACGATTTGATTGTCTCTATGTAAAAGTTAGTATGGATGGTGCTCCTTATCTCAGAAAAGTTGATCTCAAAATTTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGCGATGTTCCTTGGGGGATGTTTGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAAGCAATTGGGCTAGGTATGAAAGGTTAA 966 0.3841 MSTPLEHDYISLTDNTSMDKSSSSLNFKETELRLGLPGCESPDRKPVIASGGGVSFFGNKNLNINVCSPMKNLVASVGAKRGFFDAIDDESSGKWIFSVNDGSQGGATLFSPRGENVGKSLVSLETQTNTQKININAPKNINEILHQSVKPVVHEKNKQVDGTNEDANAPAAKTQIVGWPPIRSFRKNTMASNLTKSNDEAEGKQRFDCLYVKVSMDGAPYLRKVDLKIYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLGMKG 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04729 321 FunFam Auxin-responsive protein 204 321 - -
Trre11g04729 321 Pfam AUX/IAA family 29 318 IPR033389 -
Trre11g04729 321 Gene3D - 204 320 - -
Trre11g04729 321 SUPERFAMILY CAD & PB1 domains 209 310 - -
Trre11g04729 321 ProSiteProfiles PB1 domain profile. 209 311 IPR000270 GO:0005515
Trre11g04729 321 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 316 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04729 Trre-Chr11 58692198 58694157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04729 197 314 B3 DNA Binding Superfamily AT2G46530 32.773 1.68e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre11g04729 AUX_IAA 1.5e-86 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04729 K14484 - gmx:100806699 426.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04729 11 58692198 58694157 Trre11g04729 11 58692198 58694157 ECH
Trre7g05736 7 62455709 62462519 Trre11g04729 11 58692198 58694157 PCT