Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04728 ATGTCTACACCATTAGAACATGATTACATAAGTTTGACAGATAATACTTCAATGGACAAATCATCTTCATCTCTCAACTTCAAGGAGACAGAGCTGAGACTAGGTCTACCTGGTTGTGAATCTCCTGACAGAAAACCAGTTATTGCTAGTGGTGGAGGAGTCTCTTTCTTTGGTAACAAGAATTTGAACATTAATGTTTGTTCTCCTATGAAGAATCTTGTAGCTAGTGTTGGAGCTAAAAGAGGTTTCTTTGATGCTATTGATGATGAATCTTCTGGCAAATGGATTTTCTCTGTTAATGATGGATCTCAAGGTGGAGCTACTTTGTTTTCTCCTAGAGGAGAGAATGTTGGAAAATCTCTTGTTAGTTTAGAGACTCAAACTAATACTCAGAAGATTAATATAAATGCACCAAAAAATATCAATGAGATTCTTCACCAATCTGTGAAACCAGTAGTACATGAAAAGAATAAACAGGTTGATGGAACAAATGAGGATGCTAATGCTCCTGCTGCAAAGACACAGATTGTGGGATGGCCACCAATTCGATCGTTTCGAAAGAACACAATGGCATCAAATTTGACAAAGAGCAATGATGAAGCTGAGGGAAAACAACGATTTGATTGTCTCTATGTAAAAGTTAGTATGGATGGTGCTCCTTATCTCAGAAAAGTTGATCTCAAAATTTACAACAACTATATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCACATGCTTTACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGCGATGTTCCTTGGGGGATGTTTGCCGACTCGTGTAGGAGACTAAGGATCATGAAAGGCTCCGAAGCAATTGGGCTAGCTCCAAGAGCCATGGAAAAATCTTAG 978 0.3865 MSTPLEHDYISLTDNTSMDKSSSSLNFKETELRLGLPGCESPDRKPVIASGGGVSFFGNKNLNINVCSPMKNLVASVGAKRGFFDAIDDESSGKWIFSVNDGSQGGATLFSPRGENVGKSLVSLETQTNTQKININAPKNINEILHQSVKPVVHEKNKQVDGTNEDANAPAAKTQIVGWPPIRSFRKNTMASNLTKSNDEAEGKQRFDCLYVKVSMDGAPYLRKVDLKIYNNYMELSSALEKMFTCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFADSCRRLRIMKGSEAIGLAPRAMEKS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04728 325 Gene3D - 204 322 - -
Trre11g04728 325 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 24 316 IPR003311 GO:0005634|GO:0006355
Trre11g04728 325 FunFam Auxin-responsive protein 204 321 - -
Trre11g04728 325 Pfam AUX/IAA family 29 320 IPR033389 -
Trre11g04728 325 SUPERFAMILY CAD & PB1 domains 209 310 - -
Trre11g04728 325 ProSiteProfiles PB1 domain profile. 209 311 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04728 Trre-Chr11 58691918 58694157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04728 197 314 B3 DNA Binding Superfamily AT2G46530 32.773 1.63e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre11g04728 AUX_IAA 2.6e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04728 K14484 - gmx:100806699 441.039