Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04701 ATGATCTCTTCAACCAGATGCACTTTCCTGGGTAATTCAGGATTAGGTGGGTGTGGTAATTTTCATGGAGGGCAGAGAAGGGGTTGTGGTCCTTGGAGGGTGACCTGTATGTCACCAAGCAATGACAGAAATGGCAGTGTTGTTAATGTGATGGAGACACCTTTGAAGGAAATTAAAAAGGAGCATGTGGAGGTGGAGGTGGTGGAGGATGTTGATGATAATCCGATCTCCGGTGGTGGCCCTCGTGATGTTTATGGCGAAGATAAGGCCACTGAGGATCACTTTGTAACTCCTTGGAGTGTGTCTGTTGCTAGTGGTTATACATTGTTGCGAGATCCACACTTCAACAAAGGGTTGGCTTTCACTGAAAAAGAGAGGGATGCACACTACTTGCGTGGTCTTCTTCCTCCAACAGTTATACCTCAAGAAACTCAGGTGAAGAAAATGATCCAGCACATACGTCAATATCAAGTTCCGTTGCAGAGATACACGGCAATGATGGATCTTCAGGAAAGAAATGAACGTTTGTTTTACAAACTTCTCATTGAACACGTTGAAGAATTGCTTCCAATTGTGTATACTCCAACTGTTGGTGAGGCTTGCCAAAAATACGGGGACATTTTTATGCGTCCCCAAGGTCTTTATATAAGTTTGAAAGAGAAGGGGAGGATTCTTGAAGTACTGAGGAATTGGCCTGAAAAGAACATTCAAGTCATAGTTGTAACTGATGGAGAACGGATCTTAGGTCTCGGCGATCTAGGTTGTCAGGGAATGGGAATACCGGTGGGAAAACTTTCTTTATATACGGCACTAGGAGGAGTTCGTCCTTCAGCTTGCTTGCCTATTACTATCGACGTGGGGACAAACAATGAGAAGCTGCTCAATGATGAATTATATATTGGACTAAAGCAAAGACGAGCAGTCGGGCAGGAATATTCTGAACTCTTGCACGAATTTATGACTGCAGTCAAGCAAACTTACGGTGAAAAAGTCCTAATTCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTGCTTGAAAAATATAGATCAACACATCTGGTTTTTAACGACGATATTCAGGGAACAGCGTCTGTTGTTCTTGCTGGACTAGTTGCAGCTTTGAAATTAGTTGGCGGAAACTTAGCTGACCACAGATTCTTATTCCTCGGTGCTGGAGAGGCGGGTACGGGAATCGCTGAACTCATTGCACTTGAAACATCGAAACAGACAAATCTTCCGTTGGAGGAAGTGCGCAAGAATATTTGGTTGGTGGACTCAAAGGGATTGATTGTCAGATCCCGTAAAGAATCTCTCCAACATTTCAAGAAGCCGTGGGCTCATGAACATGAACCTGTTAAAAACCTTCTCGACGCTGTTAATAAAATTAAGCCAACAGTGCTTATCGGAACATCAGGACAAGGAAGAACTTTTACCAAAGAGGTGATCGAGGCAATGGCTTCTATTAACGAGAAACCTATTATCCTTTCTCTTTCCAACCCAACATCACAGTCAGAATGTACTGCTGAAGAAGCTTATAAGTGGAGCAAGGGACGTGCGATTTTTGCAAGTGGAAGCCCATTTCCACCGGTTGAATATAACGGGAAAGTGTTTACGCCTGGCCAGGCAAACAATGCATACATATTTCCTGGATTCGGTCTAGGTTTAATAATGTCCGGTACTATTCGTGTACATGACGACCTGCTTTTGGCTGCCTCTGAGGCATTGGCTGCACAAGTATCAGAAGAGAACTTTGAGAAGGGTTTGATATTCCCACCATTCACCAACATCAGAAAGATTTCAGCTCACATAGCTGCCAAAGTTGCTGCTAAGGCTTATGAGCTTGGTTTGGCCACTCGCCTTCCACAGCCGAAAGATTTGGTGAAGTTTGCCGAGAGCTGTATGTATACCCCAGCCTACAGGACCTACCGGTGA 1938 0.4401 MISSTRCTFLGNSGLGGCGNFHGGQRRGCGPWRVTCMSPSNDRNGSVVNVMETPLKEIKKEHVEVEVVEDVDDNPISGGGPRDVYGEDKATEDHFVTPWSVSVASGYTLLRDPHFNKGLAFTEKERDAHYLRGLLPPTVIPQETQVKKMIQHIRQYQVPLQRYTAMMDLQERNERLFYKLLIEHVEELLPIVYTPTVGEACQKYGDIFMRPQGLYISLKEKGRILEVLRNWPEKNIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLLNDELYIGLKQRRAVGQEYSELLHEFMTAVKQTYGEKVLIQFEDFANHNAFDLLEKYRSTHLVFNDDIQGTASVVLAGLVAALKLVGGNLADHRFLFLGAGEAGTGIAELIALETSKQTNLPLEEVRKNIWLVDSKGLIVRSRKESLQHFKKPWAHEHEPVKNLLDAVNKIKPTVLIGTSGQGRTFTKEVIEAMASINEKPIILSLSNPTSQSECTAEEAYKWSKGRAIFASGSPFPPVEYNGKVFTPGQANNAYIFPGFGLGLIMSGTIRVHDDLLLAASEALAAQVSEENFEKGLIFPPFTNIRKISAHIAAKVAAKAYELGLATRLPQPKDLVKFAESCMYTPAYRTYR 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04701 645 FunFam Malic enzyme 104 358 - -
Trre11g04701 645 CDD NAD_bind_1_malic_enz 361 639 - -
Trre11g04701 645 ProSitePatterns Malic enzymes signature. 357 373 IPR015884 GO:0004471
Trre11g04701 645 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 88 360 IPR046346 -
Trre11g04701 645 PIRSF ME 57 645 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 Gene3D - 359 645 - -
Trre11g04701 645 PRINTS Malic enzyme signature 357 373 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 491 507 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 176 200 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 388 404 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 272 294 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 332 350 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 PRINTS Malic enzyme signature 236 265 IPR001891 GO:0004470|GO:0004471
Trre11g04701 645 SMART malic_2 170 351 IPR012301 GO:0004471
Trre11g04701 645 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Trre11g04701 645 PANTHER MALIC ENZYME-RELATED 79 644 - -
Trre11g04701 645 Pfam Malic enzyme, N-terminal domain 170 351 IPR012301 GO:0004471
Trre11g04701 645 Gene3D - 104 358 IPR037062 GO:0004471
Trre11g04701 645 SMART Malic_M_2 361 614 IPR012302 GO:0051287
Trre11g04701 645 Pfam Malic enzyme, NAD binding domain 361 613 IPR012302 GO:0051287
Trre11g04701 645 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 361 644 IPR036291 -
Trre11g04701 645 FunFam Malic enzyme 359 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04701 Trre-Chr11 58488741 58493142 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04701 K00029 - gmx:100791514 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00448 15 3218666 3223109 Trre11g04701 11 58488741 58493142 ECH
Trre7g05710 7 62287935 62292562 Trre11g04701 11 58488741 58493142 ECH
Trre5g05471 5 55333036 55337188 Trre11g04701 11 58488741 58493142 ECH
Trre11g04701 11 58488741 58493142 Trre11g04701 11 58488741 58493142 ECH
Trre11g04701 11 58488741 58493142 Trre5g05471 5 55333036 55337188 ECH
Trre11g04701 11 58488741 58493142 Trre15g00448 15 3218666 3223109 PCT