Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04700 ATGACTCGGCGGTGCTCTCACTGCAGCAATAACGGCCATAACTCACGGACATGTCCGTCTAGAGGAAGCGGCGGCGGTGGCGGAGGGGTTAAGCTTTTCGGAGTTAGATTAACCGATGGATCAATCATTAAAAAAAGCGCGAGTATGGGAAACCTTAACCTCGCTGCACTTCACCATTGTTCTTCTTCTTCGCTTAATCCTGGTTCATCGATTAATCCCGGTTCACCTTGTTCTGACCCGCATAATGACCCCGACGGTTATTTATCTGATGATCCGGCTCATGCTTCTACCTTCGTCTCCCGTCGCGGCGAAAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGATTGTTCTTGGTTGGTCTCCATAAGCTAGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCACAGAAATACTTTATCCGGCAGAGTAATGCTACTAGGAGAAAGAGGCGTTCCAGCCTTTTTGACATGGCTCCAGATATGTGTCCTGATTCAACTTTGATGCCAGAAGAACAAGTATTACTTCCACCTTCTGAGAACTCACAACCTTGCAATGGAAAATCACAGCCATCACTAAATCTCACTCTCAAGTCAGAATATGAGCCGATGGAAACTACATCCGAAGAAAATACAGAAGAGGGCAATGAAACTACAATGGGATCAAAGGGATTGACACCAATGACTCATGGATTCTTCCCATCTTATGTACCTGTCCCATTTTCAATATGGCCATCAATTGGAGCTCCATTTGAAGAAGTCAACGGAGGAGAGACATCTCATCATAGTCATCATCAGGTTCTCAAACCGATACCAGTCATTCCAAAGGAACCTGTCAATGTTGATGAACTTGTGGGAATGTCTCATCTGAGCATCGGGGAAGCACAGGTACATGACAGAGAGCCTTCTCCGCTTTCCTTGAAGTTGTTAGGAGAGCCCTCAAGGCAATCAGCATTCCATACAAATGCTCCAGTTGGTGGTAATTCTGATCTAAACAGTGGCAAAAACAGTGCCATTCAAGCAGTTTGA 1074 0.4562 MTRRCSHCSNNGHNSRTCPSRGSGGGGGGVKLFGVRLTDGSIIKKSASMGNLNLAALHHCSSSSLNPGSSINPGSPCSDPHNDPDGYLSDDPAHASTFVSRRGERKKGVPWTEEEHRLFLVGLHKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMAPDMCPDSTLMPEEQVLLPPSENSQPCNGKSQPSLNLTLKSEYEPMETTSEENTEEGNETTMGSKGLTPMTHGFFPSYVPVPFSIWPSIGAPFEEVNGGETSHHSHHQVLKPIPVIPKEPVNVDELVGMSHLSIGEAQVHDREPSPLSLKLLGEPSRQSAFHTNAPVGGNSDLNSGKNSAIQAV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04700 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 159 IPR017930 -
Trre11g04700 357 CDD SANT 110 155 IPR001005 -
Trre11g04700 357 MobiDBLite consensus disorder prediction 217 238 - -
Trre11g04700 357 Pfam Myb-like DNA-binding domain 110 155 IPR001005 -
Trre11g04700 357 PANTHER TRANSCRIPTION FACTOR KUA1 3 288 - -
Trre11g04700 357 ProSiteProfiles SANT domain profile. 111 159 IPR017884 -
Trre11g04700 357 Gene3D - 109 160 - -
Trre11g04700 357 MobiDBLite consensus disorder prediction 336 357 - -
Trre11g04700 357 MobiDBLite consensus disorder prediction 1 21 - -
Trre11g04700 357 ProSiteProfiles Myb-like domain profile. 103 155 IPR001005 -
Trre11g04700 357 MobiDBLite consensus disorder prediction 1 25 - -
Trre11g04700 357 SMART sant 107 157 IPR001005 -
Trre11g04700 357 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
Trre11g04700 357 MobiDBLite consensus disorder prediction 65 109 - -
Trre11g04700 357 FunFam transcription factor MYB1R1 109 160 - -
Trre11g04700 357 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04700 Trre-Chr11 58459835 58462812 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre11g04700 Myb_DNA-binding 6.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04700 - - gmx:778036 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04700 11 58459835 58462812 Trre11g04700 11 58459835 58462812 ECH