Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04694 ATGAATGAAATGACAAGAAATGAAAGAGAATCTTCAGAAGAAAGGAAGCTAGAGCTAAGACTTGCTCCACCTGGTGTTGAAAACTGGTTTCACACCAACAACAAACAAAGAGATTATGATTATGATTATGATTATGAGTCTAAACTCTCACTTGGTACTACTAATTACTTCTCAAACACAAACACAAAAAATCATCTTCATTTCCCATCAAACAAACATGTTGTTATGAGAGGTAAAGAATCATCATCATCACAAACCCGTTGTCCTAAATCAGTAGAGTTACAGAATGGTGGTGATAACAAAGTTACAGCTGTTTCCAACACTTCTCAGAAAAGAACTGCTCCTGGACCAGTAGTGGGTTGGCCACCAATTCGTTCATTCAGGAAGAATCTTGCAACAAGCAGCAATTCTTCTAAGCCATCATCACCACCTGAGTCACATACTCAACAACATAACAATGTTGCTGGTAAAAAACCTATTGACAATTATGGTAAAGGTTTGTTTGTTAAGATTAATATGGATGGTGTTCCAATTGGTAGAAAAGTTGATCTTAATGCTTATCATAGCTATCAAAATCTTTCCTCAGCTGTGGATGAGCTCTTTAGAGGACTACTTAAAGCTCAACGAGATTCCTCTTCTATTGGAGGTAACAAGAAGGAAGAGGAAGAGAAAGTGATTACTGGATTATTGGATGGAAGTGGAGAGTATACTCTTGTATATGAGGATAATGAAGGAGACAGGATGCTTGTTGGTGATGTCCCATGGCATATGTTTGTATCAACAGTGAAGAGGCTTCGTGTGTTGAAGAGTACAGAGCTTTCTGCTTTTACACTTGGTACTAAGCAAGACAAGATACCTACTTGA 864 0.3773 MNEMTRNERESSEERKLELRLAPPGVENWFHTNNKQRDYDYDYDYESKLSLGTTNYFSNTNTKNHLHFPSNKHVVMRGKESSSSQTRCPKSVELQNGGDNKVTAVSNTSQKRTAPGPVVGWPPIRSFRKNLATSSNSSKPSSPPESHTQQHNNVAGKKPIDNYGKGLFVKINMDGVPIGRKVDLNAYHSYQNLSSAVDELFRGLLKAQRDSSSIGGNKKEEEEKVITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTLGTKQDKIPT 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04694 287 Gene3D - 161 282 - -
Trre11g04694 287 Pfam AUX/IAA family 17 274 IPR033389 -
Trre11g04694 287 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 273 IPR003311 GO:0005634|GO:0006355
Trre11g04694 287 MobiDBLite consensus disorder prediction 76 114 - -
Trre11g04694 287 MobiDBLite consensus disorder prediction 74 159 - -
Trre11g04694 287 SUPERFAMILY CAD & PB1 domains 162 267 - -
Trre11g04694 287 FunFam Auxin-responsive protein 161 282 - -
Trre11g04694 287 ProSiteProfiles PB1 domain profile. 166 270 IPR000270 GO:0005515
Trre11g04694 287 MobiDBLite consensus disorder prediction 128 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04694 Trre-Chr11 58393535 58397436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04694 170 281 B3 DNA Binding Superfamily AT4G23980 33.929 2.71e-14 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre11g04694 AUX_IAA 2.3e-70 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04694 K14484 - gmx:100804593 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00458 15 3283551 3286004 Trre11g04694 11 58393535 58397436 ECH
Trre11g04694 11 58393535 58397436 Trre11g04694 11 58393535 58397436 ECH
Trre11g04694 11 58393535 58397436 Trre15g00458 15 3283551 3286004 PCT