Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04693 ATGGGAAAAGCTTCTAAGTGGTTAAAGGGGTTGTTTGGAATGAAGAAAGAGAAGGAACATAGTAACAAATCAGGTCCATTGGTTTTTGACAAGAAGGAGAAGAAAAGATCAGTGAAAGATGATAATCACATTGATCATCAGAATCACATTTCTCAAACCAATGCTGCAGAATTTGATGCTAATTATGCTTGGTACAGATCCTATGTTGCTGAAAAACAGAATGAGCATAGAAAAAATGGAATTTTGTTGAGGTCATTAAGCCATGGCAGTGGTAGATTGTTTATTGGAAGCAGGGAGAAGTTGGCTGTTGTAAAGATCCAAACTTTTTTCAGAGGATATTTGGCGCGAAAGGCTCTTAGAGCGCTAAAAGCACTTGTTAAGATACAAGCTCTTGTTAGAGGATACCTAGTTCGAAAAAGGGTTGCTGCAACACTTCACAGTATGCATGCTCTCATGAGAGCTCAAGCTGTTATCCGGTCAAGGCGAGCTCGTAATTCCATCGACAAGGAGAACATATATCAGTCAGAAATCCGTGGGCGAAAACATGTGCAAATATTTGATGAAACTAGAAATGAACAACACAATAAATGGCTTCCAAATTCGTCAAGTAAATTTGCTCCGAACCCGAAAATTGTTGTGGTTGATCCTCATAGGTCTCGTTCGAGATCTACAATGTCTGAATCTGGAGATGATCTGCATGATTACTATGAAGCAACATCATCAACTCTTCCTTATCCAATTCCACGTCGAATTTCAGTTCATGAATGCCAAAATTCTCAATATTTTGATTGGTCCGTCGATAATGTTAACAATGAACGTAAGTTCAACACGGCTCATAGCACTCCTAGATTAGCCAATTTTTCGCAAGCTAATACTCTGGAGAAGAGTGTTTCTGGAGAGACCGGCTTGTTCTTGCCTTACGACAATTTTCCCAACTACATGGCTAATACTCATTCATCTAAGGCAAGAGTAGTAAGGTCTCACAGTGCTCCAAAGCAAAGACCTGAGCTCAAGAAAAGGGTTCCATTTGATGAAATCATGGCCAAAAGAAATAGCATAAGTTGTGTTAGAATGCATTGGTAA 1083 0.3934 MGKASKWLKGLFGMKKEKEHSNKSGPLVFDKKEKKRSVKDDNHIDHQNHISQTNAAEFDANYAWYRSYVAEKQNEHRKNGILLRSLSHGSGRLFIGSREKLAVVKIQTFFRGYLARKALRALKALVKIQALVRGYLVRKRVAATLHSMHALMRAQAVIRSRRARNSIDKENIYQSEIRGRKHVQIFDETRNEQHNKWLPNSSSKFAPNPKIVVVDPHRSRSRSTMSESGDDLHDYYEATSSTLPYPIPRRISVHECQNSQYFDWSVDNVNNERKFNTAHSTPRLANFSQANTLEKSVSGETGLFLPYDNFPNYMANTHSSKARVVRSHSAPKQRPELKKRVPFDEIMAKRNSISCVRMHW 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04693 360 Pfam Protein of unknown function (DUF4005) 281 354 IPR025064 -
Trre11g04693 360 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Trre11g04693 360 Pfam IQ calmodulin-binding motif 102 120 IPR000048 GO:0005515
Trre11g04693 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 142 IPR027417 -
Trre11g04693 360 PANTHER IQ-DOMAIN 5-RELATED 1 346 - -
Trre11g04693 360 SMART iq_5 121 142 IPR000048 GO:0005515
Trre11g04693 360 SMART iq_5 98 120 IPR000048 GO:0005515
Trre11g04693 360 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Trre11g04693 360 Gene3D - 63 125 - -
Trre11g04693 360 ProSiteProfiles IQ motif profile. 123 150 IPR000048 GO:0005515
Trre11g04693 360 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04693 Trre-Chr11 58369860 58371630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04693 1 358 IQD Protein Family AT3G16490 37.531 1.26e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04693 - - gmx:100797686 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04693 11 58369860 58371630 Trre11g04693 11 58369860 58371630 ECH
Trre11g04693 11 58369860 58371630 Trre15g00461 15 3315001 3317265 PCT