Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04675 ATGGATAGTCTTAGTTGGAATGATGACTCACAACTTATTGCCAACATACCAATCTTGTGGAACACTCAACCACAAGATCTTGAAAGAGACTACTCAATGTCCAATCCAAGTTCAAATGTTTTTAATTATCAAATGCAAGATATGCAGAAGATTCAATCATCAGGAGCTGAAACCAATTGGGAAGAAACTTTAATATTCCAATCATACCCTTCTTCACTTTCAGTCAATATCAACACACCTAACAATTATGTACCAAATTTCAACATGTCCCATCAACAAAACAGCAAGAGTACTATTTCATGCTCTCTTGAATCATCACTTGATTGTTTGCTTTCAGCAACTACTAATAGTAACACTGACACTAATTCTATTCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAATAGAAATTCATGGAACTTCAGTGCAGTTTCCTCTGTTGAATCCATTAATGCTACAAACAAAGACATGCAGTGTCCATTCAAGGAACTAGAGGAAATCATTGATTCCAATTCCAAGGTTCATTCCACAAAAAGGACTAAGATTGATCAATATGATCCTTATAACTTCAGTATTACTCAGAATTCTTCTGCTACTGAATTTGGTTTCAAGTTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCATGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCGGTATCATTGTCAAATTCATCCATTCATGAAGAGCCTGATCCAGAGGCTATAGCACAAATGAAGGAAATGATATATAGAGCCGCGGCTTTTAGGCCAGTGATGAATTTAGGTTTGGAAGTGATGGAAAAGCCGAAAAGGAAGAATGTCAAGATATCGAATGATCCACAAACTGTGGCTGCAAGACAAAGAAGGGAAAGAATAAGCGAAAGGATTCGAGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGGTCACAAGTCAAAGCACTAGAGAATCTTGGAAACAAGATTGATACAATGAAGACTTGTCCTTCTACAAACATAGCTTTCTCTTTCAACCCTTCAATTCCCATGCAAAGTACTCATTTTCCCATCCAAAACCCTAATGACAACATCCAATATTCTCGGGGTTGA 1182 0.3672 MDSLSWNDDSQLIANIPILWNTQPQDLERDYSMSNPSSNVFNYQMQDMQKIQSSGAETNWEETLIFQSYPSSLSVNINTPNNYVPNFNMSHQQNSKSTISCSLESSLDCLLSATTNSNTDTNSIQDDGISMIFSDCKNRNSWNFSAVSSVESINATNKDMQCPFKELEEIIDSNSKVHSTKRTKIDQYDPYNFSITQNSSATEFGFKFISEKPPKSKKPRWDNKCHGSSNINFQQPNSSVSLSNSSIHEEPDPEAIAQMKEMIYRAAAFRPVMNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNKIDTMKTCPSTNIAFSFNPSIPMQSTHFPIQNPNDNIQYSRG 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04675 393 SMART finulus 296 345 IPR011598 GO:0046983
Trre11g04675 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
Trre11g04675 393 Pfam Helix-loop-helix DNA-binding domain 300 339 IPR011598 GO:0046983
Trre11g04675 393 Gene3D - 295 358 IPR036638 GO:0046983
Trre11g04675 393 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 389 IPR045843 GO:0003700|GO:0006355
Trre11g04675 393 FunFam BHLH transcription factor 293 357 - -
Trre11g04675 393 MobiDBLite consensus disorder prediction 227 248 - -
Trre11g04675 393 Coils Coil 329 349 - -
Trre11g04675 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 296 349 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04675 Trre-Chr11 58284865 58286046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04675 105 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 55.705 2.46e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre11g04675 HLH 5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04675 - - gmx:100793830 410.223