Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04661 ATGGCAACAGTACCTGGTCCACTTGTTTGGGAGATCGTGAAGAGGAACAACTCATTTTTGGTTAAAGAGTTTGGAAATAACACTCAGAGTGTTCAATTCAGCAGAGAGCCAAACAATCTCTACAACCTCAACTCCTTCAAATACTCTGGTTTGGCCAACAAGAAAACTGTAACTATCCAGGCTGCTGGTAAAGATCAGTCTGTGTTGTTGGCAACCACCAAGCCAAGGAAGCAGAACAAGCCTGCAGCTTTACTTCACAAATCTGTGATGAAGAAGGAGTTCAGGAGAATGGCAAAGGCTGTACAAAATCAGGTGGCAGATAACTACTACAGACCTGATCTCAAGAAGGCTGCTCTTGCAAGGTTGAGTGCTGTCAACAGAAGCCTCAAAGTTGCAAAGTCTGGTGCAAAGAAGAGAAACAGACATGCATGA 432 0.4398 MATVPGPLVWEIVKRNNSFLVKEFGNNTQSVQFSREPNNLYNLNSFKYSGLANKKTVTIQAAGKDQSVLLATTKPRKQNKPAALLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGAKKRNRHA 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04661 143 Gene3D - 7 133 - -
Trre11g04661 143 PANTHER 60S RIBOSOMAL PROTEIN L28 1 142 IPR002672 GO:0003735|GO:0005840|GO:0006412
Trre11g04661 143 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
Trre11g04661 143 FunFam 60S ribosomal protein L28 5 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04661 Trre-Chr11 58220173 58222407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04661 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 1.22e-73 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04661 K02903 - gmx:100500189 257.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g00531 15 3767671 3769326 Trre11g04661 11 58220173 58222407 ECH
Trre11g04661 11 58220173 58222407 Trre11g04661 11 58220173 58222407 ECH
Trre11g04661 11 58220173 58222407 Trre15g00531 15 3767671 3769326 PCT