Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04660 ATGGATTGGTTAGTGAATCGTTGGACTGGTGTTGCGGCAGCAATCTGGATCCAGTGGAGTTGTGGTGCATCATACACCTTCAGCATCTACTCTCCTCTCCTCAAATCCACACAAAACTATAACCAATCAACGCTCGACACTGTCTCCGTCTTCAAAGATATTGGTGCCAACTTCGGCGTCCTCTCCGGCCTCCTTTACTCTGCTGTCACACCTTATGGTGACCGCCAACTTCCGTCCAATAAGTCTAAATGGAGTTCCCTTGGTGGGCCTTGGATTGTTGTGGCTGCAGGTGCTGTTCAGATCTTTGTGGGCTTTTTCTTTATTTGGGCTTCTGTTATGGGCTTGATCCATCAGCCTCCTGTTCCAGTCATGTGCTTTTTTGCTTGGCTTGCTGCTAATGGTCAGGCTTTTTTGAATACTACTAATGTTGTTACTGGGTTGCGTAATTTTCCTCAGTATAGTGGCACCATCATTGGTATCATGAAGGGTTTTCTTGGGCTTAGTGGAGCTATCTTGATTCAACTGTATCACACATTTTTCGATGGTGACCCAGCCACCTTCCTTCTGATGCTAGCTTGCTTACCTGCAATCATCTCTGTGTTATTTATGTTTCTGGTGAGGATCTATCAAGTGCAAGACTGTGATTACAAGAAGCACTTAGATGATTTCTCTGTGGTCACTGTCATTATTGTTGTGTATCTCATGTTCATAATAGTTTTACAAAACGTCGGGAGCTTACCATATTGGGCACGAGTTTTTACATTTGTGGTCCTTATGGTTCTACTAGCATCGCCTTTTGGCATTGCCATAAAAGCTCATTGGGAGGATTCGAGGATATTTTCACAAGCTCGCTCCACTGAGACTGCTGCCCCTTCAATAGAATACCAAGAGCTGCCTAGAGAGGAGGTGCAAGTACAGGATATGTCAGGGGATGTGTTGCCCCTTGAACAAGAAATGAACCTATTACAAGCTATGTGTACTGTTGAGTTTTGGATGTTGTTTGTAACCATGATAGCCGGTTTGGGTTCTGGCCTTTCGATGATAAATAATATGAGCCAGATAGGAGAATCTCTTGGTTACAGTGCTATTGAGATCGGCAATATGGTGTCATTATGGAGTATGTGGAATTTTCTCGGCCGTTTTGGTGGCGGTCGTGTATCCGATTATATCATGCACAAAAGAGGTTGGCCACGGCCCCTGTTGTTGACTGTAACTCTGGGTTTTACGATTCTCGGTCATTTAATCATTGCTTCTGGTTTTCCTGGAAATTTTTATTTGGGTCCTGTCTTGGTGGGAATATGCTATGGTACAAATTGGTCCTTAATGCCAACAATCACTTCTGAGATATTTGGTGTGAAGCACATGGGTACCATTTTCAACACTATTGCTGCATCAAGTCCACTTGGGTCTTATATACTTTCTGTGAGAGTTGTTGGATATATATATGATAAGGAAGCCAATAAAGAAGATAACTCATGCTTTGGCATCCACTGTTTCATGTTGTCGTTTCTGATCCTGGCTGGTGTGACTTTTCTAGCATTTTTGGTCAGTCTGGCGTTGTATTTCCGGACCCGAAGATTCTATAAGCTAGTTGTGCTTAAAAGATTAAAACATTATGCATCATGA 1626 0.4305 MDWLVNRWTGVAAAIWIQWSCGASYTFSIYSPLLKSTQNYNQSTLDTVSVFKDIGANFGVLSGLLYSAVTPYGDRQLPSNKSKWSSLGGPWIVVAAGAVQIFVGFFFIWASVMGLIHQPPVPVMCFFAWLAANGQAFLNTTNVVTGLRNFPQYSGTIIGIMKGFLGLSGAILIQLYHTFFDGDPATFLLMLACLPAIISVLFMFLVRIYQVQDCDYKKHLDDFSVVTVIIVVYLMFIIVLQNVGSLPYWARVFTFVVLMVLLASPFGIAIKAHWEDSRIFSQARSTETAAPSIEYQELPREEVQVQDMSGDVLPLEQEMNLLQAMCTVEFWMLFVTMIAGLGSGLSMINNMSQIGESLGYSAIEIGNMVSLWSMWNFLGRFGGGRVSDYIMHKRGWPRPLLLTVTLGFTILGHLIIASGFPGNFYLGPVLVGICYGTNWSLMPTITSEIFGVKHMGTIFNTIAASSPLGSYILSVRVVGYIYDKEANKEDNSCFGIHCFMLSFLILAGVTFLAFLVSLALYFRTRRFYKLVVLKRLKHYAS 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04660 541 Gene3D MFS general substrate transporter like domains 328 537 IPR036259 -
Trre11g04660 541 Pfam Nodulin-like 7 68 IPR010658 -
Trre11g04660 541 Pfam Nodulin-like 90 269 IPR010658 -
Trre11g04660 541 ProSiteProfiles Major facilitator superfamily (MFS) profile. 328 541 IPR020846 GO:0022857
Trre11g04660 541 Pfam Major Facilitator Superfamily 333 526 IPR011701 GO:0022857|GO:0055085
Trre11g04660 541 SUPERFAMILY MFS general substrate transporter 231 526 IPR036259 -
Trre11g04660 541 CDD MFS_Mch1p_like 7 513 - -
Trre11g04660 541 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 8 529 - -
Trre11g04660 541 SUPERFAMILY MFS general substrate transporter 4 208 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04660 Trre-Chr11 58213894 58216198 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04660 1 538 Nodulin-like Gene Family AT1G74780 55.844 0.0 596
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04660 - - gmx:100775628 880.552