Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04648 ATGGAAGTCGGTGATGGAAATAGAGAGCATGTCATTGATGGGATTGAAGAGCACGTTTGCAATGAAAATGCTGACAATGATTCATGTGCCGTTGACTTAGAGGTTGATGGTAAAGAACCATATGTTGGAATGGAATTTGGTTCACAAGAAAATGCTTATTCATTCTATAGTGATTATGCAAAAGTTGTCAGGTTTGGAATATCAACTAAACATAGTCGTCGATCAAAAGTTTTGAAACAGTTTATCGATGTGACTTATGCTTGCACAAGATATGGGAAGAAGCGGGAATCCATTGCACAAAATCCACGTCCTTGTTTGAAGGTGGAATGTGAGGCTAGCTTCCGTATAAAAAGAAATTGTGATGGAAACTGGATTGTTCATAATTTCATTAAAGACCATAATCATGAACTTTTTCCAGCATATGCACATTATTTTCCTTGTCACAGAGGAATCAATAAAGCTCAAAAGCATTATATTGAAACTTTGCAACATGCTGGAGTGAGAACAAGCCAAATTTATGATGCAATGGCCAAACAACATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATATCAGAAATCATTTAGATAAAGGTCGACGCTTGGCTTTAGAATCAGGAGATGCAAATGCAATGTTCGAGTGCTTTCTGCACATGCAAGAAGAAAATCCAAGATTCTTTTATGCAATTGATTTAGATGACGAAGATCGTATAAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGATGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATACATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGCTACTTGGTTGTGCATTACTCTCAGATGAGTCCGCACATACTTTCACGTGGTTGATGAAAACATGGCTTAGAGCAATGGGTGGAAAACCTCCTAATGCAATTATAACTGATCAAGATAGAGCAATGAAGGCAGCTATTAAAGAGGTATTTCCTAATACTCGACATCGCTTTTGTCTTTGGCATATACTTCGTAAGGTGCCCGAAAAGCTTAGTCATGTATGGAGTAAACATGGAGACTTCATGATGTATCTCAACAGATGCATTTATAAGTCTTGGTCAGAACAACAATTTGAAGATTCATGGCATGAAATGGTAGAAAAATTTCAACTATCGGAAGATGCGTGGATTCACTCTTTATATGAAGAACGTGAACATTGGGTTCCTGTTTACATGAAGGATACTTTTTTTGGTGGCTTGTCAACTACTCAGAGATCAGAGAGCATTAATTCTTTTTTTGACAAATATGTATGTAAGAAAACTACATTAAGGGAATTTGTTGAAAAATATAAGGTTGCTTTACAAGATAGAGAAGAAGCGGAAATGCAAGCTGATTTTAATACATGGCATAAACAACCTGTTCTTAGGACTCCATCACCTTTTGAGAAGCAAATGTCAATGATTTATACACATGAAGTCTTCAAGAAATTTCAAGTTGAAGTTTTGGGATTATCTGGATGTCATATTGTGAAAGAGCATAAAGATAATCAAGTTACCACTTTTGAAATCTTTGACTTTCAGAAAAATGAAGAGCTTGTTGTAGAGTGTGATGTATTGAAAGAGCAAATATCATGCATATGTCACTTGTTTGAGTATAATGGATATCTTTGTAGACATTCATTAATGGCACTCCAAACTGTTGGTGTATTTGCTGTCCCGCCACATTATATATTGAGAAGATGGACCAAAGATGTTAGAAGCAAGCATCACAAAAGGAAAATGAAAGAAGATGTTTGTTCTAGTAAGGAGAGATATGATCATTTATATCAAAATGCTATAGAATTGCTTGAGGAAGGATCATTAAGTTTTGAGAGCTACGATTTTGCATGTCATGCACTTGAAGAGGCCCTAAAACAATGTGTAACTATCAATCAATCTTTGAAAATAGACAAGGAAAAAGTTAGTCATAACAATTTACATGAGAAGCCACTACGTGATCCTCAAGAAAAAAAAACAAAAGGTGCTCCAAGAAGAATGAAGAGTGGAATAGAGAAAGGTCGTAAAAGAACATCTAATGATAAATTAAAAAAGGTAAATCAAGAGGGTTCAAGGAGTTAA 2139 0.353 MEVGDGNREHVIDGIEEHVCNENADNDSCAVDLEVDGKEPYVGMEFGSQENAYSFYSDYAKVVRFGISTKHSRRSKVLKQFIDVTYACTRYGKKRESIAQNPRPCLKVECEASFRIKRNCDGNWIVHNFIKDHNHELFPAYAHYFPCHRGINKAQKHYIETLQHAGVRTSQIYDAMAKQHGGYENIGCLEKDIRNHLDKGRRLALESGDANAMFECFLHMQEENPRFFYAIDLDDEDRIKNVFWVDAKGRDDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLSDESAHTFTWLMKTWLRAMGGKPPNAIITDQDRAMKAAIKEVFPNTRHRFCLWHILRKVPEKLSHVWSKHGDFMMYLNRCIYKSWSEQQFEDSWHEMVEKFQLSEDAWIHSLYEEREHWVPVYMKDTFFGGLSTTQRSESINSFFDKYVCKKTTLREFVEKYKVALQDREEAEMQADFNTWHKQPVLRTPSPFEKQMSMIYTHEVFKKFQVEVLGLSGCHIVKEHKDNQVTTFEIFDFQKNEELVVECDVLKEQISCICHLFEYNGYLCRHSLMALQTVGVFAVPPHYILRRWTKDVRSKHHKRKMKEDVCSSKERYDHLYQNAIELLEEGSLSFESYDFACHALEEALKQCVTINQSLKIDKEKVSHNNLHEKPLRDPQEKKTKGAPRRMKSGIEKGRKRTSNDKLKKVNQEGSRS 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04648 712 Pfam FAR1 DNA-binding domain 54 139 IPR004330 -
Trre11g04648 712 Coils Coil 450 470 - -
Trre11g04648 712 ProSiteProfiles Zinc finger SWIM-type profile. 537 575 IPR007527 GO:0008270
Trre11g04648 712 Pfam SWIM zinc finger 543 574 IPR007527 GO:0008270
Trre11g04648 712 Pfam MULE transposase domain 259 352 IPR018289 -
Trre11g04648 712 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 32 648 IPR031052 GO:0006355
Trre11g04648 712 SMART 26again6 550 577 IPR006564 GO:0008270
Trre11g04648 712 MobiDBLite consensus disorder prediction 661 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04648 Trre-Chr11 58129753 58132126 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre11g04648 MULE 8.1e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04648 - - tpra:123886760 1163.67