Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04646 ATGGACAAAAAGCTTGAGCTCATCCATGGAACAATTGAAGCTACCATCTTTAATGCAACTCCTTACTCCCCATCGTTTCCCTTCAATTGTTTATTTATAAATGGAAAGCCTGCTTATGTGACAATCAAGATAGACAACAAAAAAGTGGCAAAAACAACACAAGAAAGTGAACGTGTTTGGAACCAAACATTTAAGATTCATTCTGCTCATTTAGCTGATTCAACTATCACTATTACAATGAAAACATCATGTTCCATATTAGGAAAATTCCACATCCAAGCACAACAGTTGAAGGAAGAGAGTTTGGTCAATGGATTCTTCCCTCTCCTAATGGAAAATGGTAAACCAAATCAAGAACTAAAATTAAGGTTTATATTATGGTTCAAACCAGCAAATTTAGAACCAAGTTGGACAAAGTTACTAAGTAGTGAGGAGTTTCAAGGGCTGAGGGATGCTACATTCCCACAAAGATCTAATTGTCATGTTAAGCTTTATCATGATGCTCACCATTCACCTACTTTTCAACCTCCTTTTGATAATTGTGGAGTTCCAACAAAGCTATGGGAAGATGTTTATAAAGCTATTGAGGGTGCAAAATATTTAGTATATATTGCAGGCTGGTCCTTCAATCCTAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCGCACATGCTAGAGAAATAAAGTTGGGTGAGTTATTGAAGAAGAAAGCAGAAGAAGGAGTTGCTGTGAGGATTATGATTTGGGATGATGAAACATCATTGCCATTTATCAAGAACAAAGGTGTGATGAACACACATGATGAGGATGCTTTTGCTTACTTTAAACACACGAAAGTATTATGCAGAAAGTGTCCTAGATTACATAACAAATTCCCAACAATCTTTGCTCATCATCAGAAAACCATAACTGTGGATACCAAAGCTCCTAATTCTGTCAATGACAGAGAAATTATGAGCTTTTTGGGCTGTTTAGATTTATGCAACGGTCGATATGATACCGAGAAACATTCGTTGTTTCAAACACTTACTATGGAATCACATTACCATGATTTCTACCAGACAAATATTTCAGGAGCTAGCCTCAACAAAGGAGGTCCAAGAGAGCCTTGGCACGATGCTCATGCTTGTGTTACCGGCGAGGCTGCTTGGGATGTATTAACCAACTTTGAACAAAGATGGACAAAACAATGTGATTCGTCTCTTCTAGTCCCCGCAAACACTTTACAAAATCTCATTCCTATTTCCTCAACAAACACTTCCTTGGAAAGGAATTGGAATGTACAAGTATATCGGTCGATCGACCATCTCTCAGCTAGCCAACTGTTTAGAAAACTAACAGTTGAGAGTAGCATTCATGAGGCATATGTCGAAGCAATTAGGCATGCCGATAAGTTTGTGTACATTGAAAACCAATATTTCATTGGAGGGTGCCATTTGTGGCAAAAAGATAAAAACAGTGGCTGCAGAAATTTGATTCCTATTGAGATTGCACTCAAAATTGTCAACAAGATTAAAGCAAGAGAAAGATTTGCAGTGTATATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACAAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGTGAACCAGGACATCCAAGAGATTATTTGAATTTCTTTTGCCTTGCCAATAGGGAAAAGAAGGAAAATGAAGAGTATCTTCCTCCACACTCTCCTCATCCTGAAACTCAATATTCGAATGCACAGAAAAATAGAAGATTTATGGTTTATGTTCATTCCAAGCTCATGATAGTGGACGACCTATATATATTAATAGGATCAGCGAATGTGAACCAAAGATCGATGGACGGGCAAAGGGACACGGAGATTGCGATCGGAGGCTACCAATCTCAAGATGGAGTTAATCACTGCATGAACAAAGGTGATATTCATGCATACAGAATGTCAATGTGGTATGAACACACTGGTAGTGCTGAGAAGTTGTTTTTAGAACCAGAAAGTTTAGAATGTGTGCAGAGAATGTGTTCAATAGGAGATAAAATGTGGAAAATATATAGTAGTGAAGAAATTGTTGACATGGAAGGTGTGCACCTAGTAACATATCCTATGACAGTAACAAAAGATGGATCAGTGGAGGACTTAACTAATGGTGAGGATCATTTTCCTGATACAAAGGCTCTAGTGAAAGGAACAAGATCAAAATTATTACCACCTGTCATGACTACTTAG 2277 0.3777 MDKKLELIHGTIEATIFNATPYSPSFPFNCLFINGKPAYVTIKIDNKKVAKTTQESERVWNQTFKIHSAHLADSTITITMKTSCSILGKFHIQAQQLKEESLVNGFFPLLMENGKPNQELKLRFILWFKPANLEPSWTKLLSSEEFQGLRDATFPQRSNCHVKLYHDAHHSPTFQPPFDNCGVPTKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIAHAREIKLGELLKKKAEEGVAVRIMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVLCRKCPRLHNKFPTIFAHHQKTITVDTKAPNSVNDREIMSFLGCLDLCNGRYDTEKHSLFQTLTMESHYHDFYQTNISGASLNKGGPREPWHDAHACVTGEAAWDVLTNFEQRWTKQCDSSLLVPANTLQNLIPISSTNTSLERNWNVQVYRSIDHLSASQLFRKLTVESSIHEAYVEAIRHADKFVYIENQYFIGGCHLWQKDKNSGCRNLIPIEIALKIVNKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPGHPRDYLNFFCLANREKKENEEYLPPHSPHPETQYSNAQKNRRFMVYVHSKLMIVDDLYILIGSANVNQRSMDGQRDTEIAIGGYQSQDGVNHCMNKGDIHAYRMSMWYEHTGSAEKLFLEPESLECVQRMCSIGDKMWKIYSSEEIVDMEGVHLVTYPMTVTKDGSVEDLTNGEDHFPDTKALVKGTRSKLLPPVMTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04646 758 Pfam Phospholipase D Active site motif 606 630 IPR001736 GO:0003824
Trre11g04646 758 SUPERFAMILY Phospholipase D/nuclease 145 406 - -
Trre11g04646 758 SMART pld_4 603 630 IPR001736 GO:0003824
Trre11g04646 758 SMART pld_4 295 332 IPR001736 GO:0003824
Trre11g04646 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 124 IPR035892 -
Trre11g04646 758 PANTHER PHOSPHOLIPASE D 5 742 IPR015679 -
Trre11g04646 758 Gene3D Endonuclease Chain A 174 425 - -
Trre11g04646 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Trre11g04646 758 Gene3D Endonuclease Chain A 444 652 - -
Trre11g04646 758 PIRSF PLD_plant 3 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre11g04646 758 Pfam C2 domain 38 109 IPR000008 -
Trre11g04646 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Trre11g04646 758 SUPERFAMILY Phospholipase D/nuclease 418 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04646 Trre-Chr11 58119419 58123272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04646 30 758 Phospholipase D Gene Family (Wang group) AT1G55180 61.943 0.0 963
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04646 K01115 - gmx:100807431 1333.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04646 11 58119419 58123272 Trre11g04646 11 58119419 58123272 ECH
Trre11g04646 11 58119419 58123272 Trre15g00585 15 4191307 4195234 PCT