Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04626 ATGGCAACCAACTTAGCAGAAAGGGTGCAATACCCCTTAGACTCATCCTCCTACAAGATCATCGACGAGATTGGCGCCGGTAACAGCGCCATCGTCTACAAAGCAATTTGCATCCCCATAAATTCCACACCAGTGGCTATAAAATCGATAGACTTAGACCGTTCGCGCCCTGATCTTGACGATGTTCGACGTGAAGCAAAAATATTATCACTTCTTTCTCACCCCAACATCCTCAAAGCTCACTGTTCCTTCACTGTCGACCGCCGTCTTTGGGTGGTTATGCCTTTCATGGCAGGAGGTTCATTACAATCCATAATCTCTCACTCATTCCAAAACGGCTTAACAGAACAATCCATAGCTGTTATTCTCAAAGACACTCTCAATGCTCTTTCTTACCTTCATGGACAAGGTCATCTTCATAGAGATATCAAATCTGGTAACATTCTTGTTGATTCAAATGGATTAGTGAAACTTGCTGATTTTGGTGTATCTGCTTCCATTTATGAATCAAACAACTCTGTAGGAGCATGTTCTTCTTATTCATCTTCATCTTCTAATTCTTCTTCTTCTCATATATTTACTGATTTTGCTGGAACACCTTATTGGATGGCTCCTGAAGTTATTCATTCTCATAATGGTTACAGTTTCAAAGCTGATATTTGGTCTTTTGGGATAACTGCTTTGGAATTAGCACATGGAAGACCACCACTTTCTCATCTTCCTCCTTCTAAATCAATGATGCTTAACATTACCAAGAGGTTTCGGTTTTCTGATTTTGATAAATATAGTCATAAAGGTCATGGTGGTGGTAGTAATAAATTTTCTAAGGCTTTTAAGGATATGGTTGCTTCTTGTTTGAATCAAGATCCTACAAAAAGACCCTCTGCTGAGAAGTTACTTAAGCATCCTTTCTTTAAGAACTGTAAAGGGCCAGAGTTTTTGGTGAAGAATGTGTTGAATGGATTGCCTAGTGTTGAGAAAAGGTATAAAGAGATCAAAATTATGGATCCAGATTCAAAGGGTAATGATGATGGTGATGAAGATGAGGAATCTGTGGTGAAACAAAGAAGAATTAGTGGTTGGAATTTCAATGAAGATGGATTGAAACTTGAGCCAGTATTCCCAAAGGATCTAAGCAGAGATGATGAAGTTGTGAAACAAGTTCGGTTTGAAGAAGAAAAGGTGATCAAAGAGGATGATGTTGTTGCATCATCAGGAACTGTAATGGAGGAAACAAACCCAAATGCTTCTGATGTGGTAAATCATGAAAGTGTTGGTGGTATATTGAAGAACCGCGAAGCTACGTTGGGAACTCTGAATGTGTTGAAAGAAAGCTTGGAACAAGAGCTGGGACAAGTGAAGTTTCTGATGAATTTAATTGGTGGAAATGGAGAGGAGATTCATGTGGATGACAATGAGGAGAAAATGGTGCAGGAGATCTCTAAGTTAAGGATAGAAGTAGAAAATGAGAGGAAGAAGAATTTGCAGTTGGAGTTGCAGCTGGAGAATGTCAAGCTTCACCTAATTTCCTCTGCTGTTAGTAGTCCTACAAGTTAA 1557 0.3924 MATNLAERVQYPLDSSSYKIIDEIGAGNSAIVYKAICIPINSTPVAIKSIDLDRSRPDLDDVRREAKILSLLSHPNILKAHCSFTVDRRLWVVMPFMAGGSLQSIISHSFQNGLTEQSIAVILKDTLNALSYLHGQGHLHRDIKSGNILVDSNGLVKLADFGVSASIYESNNSVGACSSYSSSSSNSSSSHIFTDFAGTPYWMAPEVIHSHNGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLNITKRFRFSDFDKYSHKGHGGGSNKFSKAFKDMVASCLNQDPTKRPSAEKLLKHPFFKNCKGPEFLVKNVLNGLPSVEKRYKEIKIMDPDSKGNDDGDEDEESVVKQRRISGWNFNEDGLKLEPVFPKDLSRDDEVVKQVRFEEEKVIKEDDVVASSGTVMEETNPNASDVVNHESVGGILKNREATLGTLNVLKESLEQELGQVKFLMNLIGGNGEEIHVDDNEEKMVQEISKLRIEVENERKKNLQLELQLENVKLHLISSAVSSPTS 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04626 518 Gene3D Transferase(Phosphotransferase) domain 1 100 352 - -
Trre11g04626 518 ProSitePatterns Protein kinases ATP-binding region signature. 24 48 IPR017441 GO:0005524
Trre11g04626 518 FunFam Serine/threonine-protein kinase BLUS1 7 96 - -
Trre11g04626 518 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 10 416 IPR047173 GO:0043539
Trre11g04626 518 SUPERFAMILY Protein kinase-like (PK-like) 15 311 IPR011009 -
Trre11g04626 518 ProSiteProfiles Protein kinase domain profile. 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04626 518 Gene3D Phosphorylase Kinase; domain 1 6 96 - -
Trre11g04626 518 Coils Coil 473 507 - -
Trre11g04626 518 SMART serkin_6 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04626 518 Pfam Protein kinase domain 18 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04626 518 FunFam Serine/threonine-protein kinase BLUS1 100 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04626 Trre-Chr11 58002967 58004523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04626 1 496 MAP Kinase Kinase Kinase Kinase AT4G14480 55.467 4.18e-180 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Trre11g04626 Pkinase 9.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04626 K08835 - gmx:100820227 653.669