Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04625 ATGAACAACAACAATAATAACAACAACATCAACAACAACATTGTCTCGAGAAACGGCAACGGAACAACACAAGCTTGTGCTGCTTGTAAATACCAACGTAGGAAGTGTGGTCCAACCTGCATTCTTGCACCATATTTTCCTCATGATCGTCAACAACAATTCATAAACGCTCATAAATTATTTGGTGTTGGTAAAATCACAAACATGATTAAGAATGTTCCGCCTCAACTTCGAGATACAACTATGGCAACAATCATGTTTCAATCTGATATGCGAGCCAAAGATCCTGTTGGTGGTTGTTATAGATATCTTCAAACACTTCAATCTCAATATGATTTTCTTGAAGCTGAGCTTGATTTAACTCGTCAACATATCGCTATCTGTCGTGCATCGTCAAGTGCTAATCATCATCATCATCATCCTTATAATGATATGATCATGAATAATAATAGTAATGATGCTGCTTTGAATATTTTAAATCAGTTTAATCAGCAGCATTTTGTTGAAGAACAAATGAATATTAATATGCTGCCACAACCGCAACAACTGCAACCGCAATATGTTAATGATGTCGATCTTAACCCTAATTATGTTCCTTTACAACAAGAGGATCTTAATAATTGGGTGAACTCTATACCGTTGTCACCGTTAACGTTGCAGGACAACAAAAAGGAGGTGGAGGAGGAAGAAGGAGAAAATGATGATCAAGAAAGTGATCAGAAACCGGTTTTTGACCTAATCAATGAAATGAATTCTTTGGATACCACTGGAAGTAATAATGTTGATCCAGGGCACCAGTGA 801 0.367 MNNNNNNNNINNNIVSRNGNGTTQACAACKYQRRKCGPTCILAPYFPHDRQQQFINAHKLFGVGKITNMIKNVPPQLRDTTMATIMFQSDMRAKDPVGGCYRYLQTLQSQYDFLEAELDLTRQHIAICRASSSANHHHHHPYNDMIMNNNSNDAALNILNQFNQQHFVEEQMNINMLPQPQQLQPQYVNDVDLNPNYVPLQQEDLNNWVNSIPLSPLTLQDNKKEVEEEEGENDDQESDQKPVFDLINEMNSLDTTGSNNVDPGHQ 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04625 266 ProSiteProfiles LOB domain profile. 24 125 IPR004883 -
Trre11g04625 266 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 23 160 - -
Trre11g04625 266 MobiDBLite consensus disorder prediction 249 266 - -
Trre11g04625 266 MobiDBLite consensus disorder prediction 219 266 - -
Trre11g04625 266 Coils Coil 104 124 - -
Trre11g04625 266 Pfam Lateral organ boundaries (LOB) domain 25 122 IPR004883 -
Trre11g04625 266 Coils Coil 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04625 Trre-Chr11 58000673 58002164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04625 24 254 AS2 family AT3G13850 40.693 4.06e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre11g04625 LOB 3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04625 - - mtr:11423276 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04625 11 58000673 58002164 Trre15g00620 15 4490414 4491531 PCT