Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre11g04623 | ATGTCCAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACCAATAATTATCATCAACAACAATACTTAGCTCCATCACAATCTACTCAAACTCATGATGAAGCTCCTCCACCTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTACAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAGCAAGCAATGAAATAATAAGGAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTTCACCATGACCCATCAAGAGCATTAGGAGACTTAACTGGTATCAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATTCCTCCTTCTCCAATTCCTCAACAAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAGCATCAAAATTTTAGCTTTTTAAGACAAGAACAAGAAACTCAAATACCCTCTTGGCTTTATCAATCTAGCAACATTGATATATCCTCTTCAAACTATTCAAGATTGAATCAAAATCAAAATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTGCATCTTACCAACCATCTGAAATTTCACCTCACATGTCAGCAACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATAAACAATTTTTCTTCTTCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATCGTCATCATGATCATAATAATATTAATCATGATGATAATGATGTTCGTGGTGTCAGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTAAGACCACTTTCTGATAGTGATATTCTCAACATTGCTGGTATGGGAAACTGCATGAATTCAAACCAAACCCAAAAACCATGGCAAGGTAATTAA | 1374 | 0.3712 | MSNLTSASGEASANSSGNRNEIGTNNYHQQQYLAPSQSTQTHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIIPPSPIPQQNSHNMINLQTQDFSLKKEHQNFSFLRQEQETQIPSWLYQSSNIDISSSNYSRLNQNQNQNQIQSLDENPNPRNGPTFASYQPSEISPHMSATALLQKAAQMGSTSSSQQQQQSMIMISGTHKHCHVSVDDNNLSSCEDQMINNFSSSGFDGTSFENTYAKNILNSNHHRHHDHNNINHDDNDVRGVSGVGAGGNDGFTRDFLGLRPLSDSDILNIAGMGNCMNSNQTQKPWQGN | 457 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre11g04623 | 457 | SMART | c2h2final6 | 155 | 175 | IPR013087 | - | |
Trre11g04623 | 457 | SMART | c2h2final6 | 78 | 100 | IPR013087 | - | |
Trre11g04623 | 457 | SMART | c2h2final6 | 120 | 150 | IPR013087 | - | |
Trre11g04623 | 457 | MobiDBLite | consensus disorder prediction | 285 | 306 | - | - | |
Trre11g04623 | 457 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 23 | 447 | IPR031140 | - | |
Trre11g04623 | 457 | FunFam | protein indeterminate-domain 12-like | 57 | 126 | - | - | |
Trre11g04623 | 457 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 133 | 212 | - | - | |
Trre11g04623 | 457 | Pfam | Zinc-finger double-stranded RNA-binding | 78 | 100 | IPR022755 | - | |
Trre11g04623 | 457 | SUPERFAMILY | beta-beta-alpha zinc fingers | 77 | 175 | IPR036236 | - | |
Trre11g04623 | 457 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 80 | 100 | IPR013087 | - | |
Trre11g04623 | 457 | Gene3D | Classic Zinc Finger | 57 | 124 | - | - | |
Trre11g04623 | 457 | Gene3D | Classic Zinc Finger | 133 | 213 | - | - | |
Trre11g04623 | 457 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Trre11g04623 | 457 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 78 | 100 | IPR013087 | - | |
Trre11g04623 | 457 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre11g04623 | Trre-Chr11 | 57980767 | 57983178 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre11g04623 | 1 | 451 | IDZ Gene Family | AT1G55110 | 50.417 | 5.92e-137 | 400 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre11g04623 | zf-C2H2_jaz | 4.6e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre11g04623 | K25870 | - | lja:Lj3g3v0323160.3 | 498.049 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre11g04623 | 11 | 57980767 | 57983178 | Trre15g00622 | 15 | 4515474 | 4518091 | PCT |