Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04623 ATGTCCAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACCAATAATTATCATCAACAACAATACTTAGCTCCATCACAATCTACTCAAACTCATGATGAAGCTCCTCCACCTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTACAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAGCAAGCAATGAAATAATAAGGAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTTCACCATGACCCATCAAGAGCATTAGGAGACTTAACTGGTATCAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATTCCTCCTTCTCCAATTCCTCAACAAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAGCATCAAAATTTTAGCTTTTTAAGACAAGAACAAGAAACTCAAATACCCTCTTGGCTTTATCAATCTAGCAACATTGATATATCCTCTTCAAACTATTCAAGATTGAATCAAAATCAAAATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTGCATCTTACCAACCATCTGAAATTTCACCTCACATGTCAGCAACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATAAACAATTTTTCTTCTTCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATCGTCATCATGATCATAATAATATTAATCATGATGATAATGATGTTCGTGGTGTCAGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTAAGACCACTTTCTGATAGTGATATTCTCAACATTGCTGGTATGGGAAACTGCATGAATTCAAACCAAACCCAAAAACCATGGCAAGGTAATTAA 1374 0.3712 MSNLTSASGEASANSSGNRNEIGTNNYHQQQYLAPSQSTQTHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIIPPSPIPQQNSHNMINLQTQDFSLKKEHQNFSFLRQEQETQIPSWLYQSSNIDISSSNYSRLNQNQNQNQIQSLDENPNPRNGPTFASYQPSEISPHMSATALLQKAAQMGSTSSSQQQQQSMIMISGTHKHCHVSVDDNNLSSCEDQMINNFSSSGFDGTSFENTYAKNILNSNHHRHHDHNNINHDDNDVRGVSGVGAGGNDGFTRDFLGLRPLSDSDILNIAGMGNCMNSNQTQKPWQGN 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04623 457 SMART c2h2final6 155 175 IPR013087 -
Trre11g04623 457 SMART c2h2final6 78 100 IPR013087 -
Trre11g04623 457 SMART c2h2final6 120 150 IPR013087 -
Trre11g04623 457 MobiDBLite consensus disorder prediction 285 306 - -
Trre11g04623 457 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 447 IPR031140 -
Trre11g04623 457 FunFam protein indeterminate-domain 12-like 57 126 - -
Trre11g04623 457 FunFam protein indeterminate-domain 5, chloroplastic-like 133 212 - -
Trre11g04623 457 Pfam Zinc-finger double-stranded RNA-binding 78 100 IPR022755 -
Trre11g04623 457 SUPERFAMILY beta-beta-alpha zinc fingers 77 175 IPR036236 -
Trre11g04623 457 ProSitePatterns Zinc finger C2H2 type domain signature. 80 100 IPR013087 -
Trre11g04623 457 Gene3D Classic Zinc Finger 57 124 - -
Trre11g04623 457 Gene3D Classic Zinc Finger 133 213 - -
Trre11g04623 457 MobiDBLite consensus disorder prediction 1 43 - -
Trre11g04623 457 ProSiteProfiles Zinc finger C2H2 type domain profile. 78 100 IPR013087 -
Trre11g04623 457 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04623 Trre-Chr11 57980767 57983178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04623 1 451 IDZ Gene Family AT1G55110 50.417 5.92e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04623 zf-C2H2_jaz 4.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04623 K25870 - lja:Lj3g3v0323160.3 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04623 11 57980767 57983178 Trre15g00622 15 4515474 4518091 PCT