Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04622 ATGATCAAAGGTTTTATAGAGGAAGAAAACATGTCCAATTTGACTTCTGCATCTGGTGAAGCTAGTGCTAATTCTTCAGGTAACAGAAATGAAATTGGTACCAATAATTATCATCAACAACAATACTTAGCTCCATCACAATCTACTCAAACTCATGATGAAGCTCCTCCACCTAAGAAAAGAAGAAACCTTCCTGGCAACCCAGACCCAGAAGCTGAAGTTATAGCTTTATCACCAAAGACACTTATGGCAACAAACAGATTCATTTGTGAGATCTGTAACAAAGGATTTCAAAGAGATCAAAATCTACAACTTCACAAAAGAGGACACAATTTACCATGGAAGTTGAAGCAAAGAGCAAGCAATGAAATAATAAGGAAGAAAGTTTATGTTTGTCCAGAACCAACTTGTGTTCACCATGACCCATCAAGAGCATTAGGAGACTTAACTGGTATCAAAAAGCACTTTTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGAAGTATGCTGTTCAATCTGACTGGAAAGCTCACTCCAAAACATGTGGCACAAGAGAATACAAATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTAGCAGAAGAAAGTTCAAAAGCTATAATTCCTCCTTCTCCAATTCCTCAACAAAATTCTCACAACATGATCAATCTTCAAACTCAAGATTTCTCATTGAAGAAAGAGCATCAAAATTTTAGCTTTTTAAGACAAGAACAAGAAACTCAAATACCCTCTTGGCTTTATCAATCTAGCAACATTGATATATCCTCTTCAAACTATTCAAGATTGAATCAAAATCAAAATCAAAATCAAATTCAAAGTCTTGATGAAAACCCTAACCCTAGAAATGGTCCCACATTTGCATCTTACCAACCATCTGAAATTTCACCTCACATGTCAGCAACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACCAGCTCATCACAACAACAACAACAATCCATGATCATGATAAGTGGGACCCACAAACATTGTCACGTGTCTGTTGATGACAATAATTTGTCCTCATGTGAAGACCAAATGATAAACAATTTTTCTTCTTCTGGGTTTGATGGAACTTCTTTTGAGAATACTTATGCTAAGAATATTCTTAATTCAAATCATCATCGTCATCATGATCATAATAATATTAATCATGATGATAATGATGTTCGTGGTGTCAGTGGTGTCGGTGCCGGAGGAAATGATGGATTTACAAGAGATTTCTTGGGTCTAAGACCACTTTCTGATAGTGATATTCTCAACATTGCTGGTATGGGAAACTGCATGAATTCAAACCAAACCCAAAAACCATGGCAAGGTAATTAA 1404 0.3697 MIKGFIEEENMSNLTSASGEASANSSGNRNEIGTNNYHQQQYLAPSQSTQTHDEAPPPKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRASNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEESSKAIIPPSPIPQQNSHNMINLQTQDFSLKKEHQNFSFLRQEQETQIPSWLYQSSNIDISSSNYSRLNQNQNQNQIQSLDENPNPRNGPTFASYQPSEISPHMSATALLQKAAQMGSTSSSQQQQQSMIMISGTHKHCHVSVDDNNLSSCEDQMINNFSSSGFDGTSFENTYAKNILNSNHHRHHDHNNINHDDNDVRGVSGVGAGGNDGFTRDFLGLRPLSDSDILNIAGMGNCMNSNQTQKPWQGN 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04622 467 Gene3D Classic Zinc Finger 143 223 - -
Trre11g04622 467 MobiDBLite consensus disorder prediction 1 71 - -
Trre11g04622 467 FunFam protein indeterminate-domain 5, chloroplastic-like 143 222 - -
Trre11g04622 467 SMART c2h2final6 88 110 IPR013087 -
Trre11g04622 467 SMART c2h2final6 165 185 IPR013087 -
Trre11g04622 467 SMART c2h2final6 130 160 IPR013087 -
Trre11g04622 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 33 457 IPR031140 -
Trre11g04622 467 SUPERFAMILY beta-beta-alpha zinc fingers 87 185 IPR036236 -
Trre11g04622 467 FunFam protein indeterminate-domain 12-like 67 136 - -
Trre11g04622 467 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Trre11g04622 467 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Trre11g04622 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Trre11g04622 467 MobiDBLite consensus disorder prediction 9 53 - -
Trre11g04622 467 MobiDBLite consensus disorder prediction 295 316 - -
Trre11g04622 467 Gene3D Classic Zinc Finger 67 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04622 Trre-Chr11 57980737 57983178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04622 8 461 IDZ Gene Family AT1G55110 50.725 2.85e-139 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre11g04622 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04622 K25870 - lja:Lj3g3v0323160.3 498.049