Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04615 ATGGATCGTGCTGCAACAGGTTTTGTTGCTGTGCTCCGAGGATTGGTAACGACAACACCAACAGAGGTGGTGTTTCTGATGGATCATGCTGCCACTGGATTATTTGTTGCTTTGCTTATAGGCCTAGTGATGGTGATGGATGGTGCTGCGACAGGATTCATGAGAGGGACACCAGTTGCTTGTGAAAGGGTTGATTTAGATTTTGTTGAAGAGATTAAAACAGAATCGGCACTTGCGCAAATATTTATGCATCAAAACATTGCAAAATCGTATGGGATAACAAGAACTTCTGAATCTACTTATTATGTTAGAGAGCTTTGTGGATCTAGCCTGAAAGACTTCATCAACTACTTTGCAACGAAATCGAAGGAACTGGTCACCGACATAGAAGCTTTAAGGTTTCTAAGAGAGTTAAAGGGAAATATGTCACCATGTTTGATGAATAAAAGGCACCAACCTTTTCCACCGGTTCTGCAATTATTGAGGGATGTGGTGTTTGACATGACATATTTGCACGAGGAGGGTTATCTGCACCGGAACCTGAACCCGAGCAGTGTTTTAATAACCACGGGGAAGCGGTTACGTGCAAAAATTTCTGATTTCAGTGTCAGCCAAAAGCTTGATGGAAATATAATTTTATACGATAATGTTACCGAAAGGTACATAGGATGCAATCTTGTTCTACGTCATCAACGGCAAATACGTGCCAGTGATATTTTTAGCATGGGCTGTGTGTTTTCGTTTTGTCTAAGGGATGGCCAACACCCATTTGGCGATGGGGATGATTCAGAACGTGCTGACAACATATTGAAAAACAAGAAATGTATCACTTCAGCCCCTGAAGTTGAGGATCTAATTTCTAAATTACTACACCCTAATCCTGAGCAAAGGCCATATGTAGAAGATATCCTATTACATCCTATGTTTAATTTGGAGCCAGGAGAAAAGACTTCAATTGTTCTAAAATTAGCTACTTCACTCCAGCAAGATAACATATATAATAATTTTGGGCTTGTTAAAGACCTACGGAAAGCAATCAGAAATAAGACTGCTCATCATGGAGATCCACAAAGCAGACACCTCAAGGGTGTGCTCGGAACTTATCCGGACAGTATTTTTACATATTTCGACAACAGATTTCCGATGCTGCTGATTGAGATCTATAAGATTGTCGTGAGGTATTGGAGGTTTAGGCCACGTTTTGAGAAATATTTTAGACTGGAGGATTAG 1230 0.4049 MDRAATGFVAVLRGLVTTTPTEVVFLMDHAATGLFVALLIGLVMVMDGAATGFMRGTPVACERVDLDFVEEIKTESALAQIFMHQNIAKSYGITRTSESTYYVRELCGSSLKDFINYFATKSKELVTDIEALRFLRELKGNMSPCLMNKRHQPFPPVLQLLRDVVFDMTYLHEEGYLHRNLNPSSVLITTGKRLRAKISDFSVSQKLDGNIILYDNVTERYIGCNLVLRHQRQIRASDIFSMGCVFSFCLRDGQHPFGDGDDSERADNILKNKKCITSAPEVEDLISKLLHPNPEQRPYVEDILLHPMFNLEPGEKTSIVLKLATSLQQDNIYNNFGLVKDLRKAIRNKTAHHGDPQSRHLKGVLGTYPDSIFTYFDNRFPMLLIEIYKIVVRYWRFRPRFEKYFRLED 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04615 409 ProSiteProfiles KEN domain profile. 272 407 IPR010513 GO:0004540|GO:0006397
Trre11g04615 409 Pfam Ribonuclease 2-5A 321 405 IPR010513 GO:0004540|GO:0006397
Trre11g04615 409 Pfam Protein kinase domain 70 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04615 409 SUPERFAMILY Protein kinase-like (PK-like) 55 310 IPR011009 -
Trre11g04615 409 Gene3D KEN domain 316 409 IPR038357 -
Trre11g04615 409 Gene3D Transferase(Phosphotransferase) domain 1 68 313 - -
Trre11g04615 409 ProSiteProfiles Protein kinase domain profile. 24 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre11g04615 409 PANTHER IRE1-RELATED 53 406 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre11g04615 409 SMART PGNneu 337 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04615 Trre-Chr11 57929824 57932464 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04615 52 304 MAP Kinase Kinase Kinase AT1G14000 24.727 1.05e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre11g04615 Pkinase 2.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04615 K08852 - csin:114283063 187.963