LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre11g04615	ATGGATCGTGCTGCAACAGGTTTTGTTGCTGTGCTCCGAGGATTGGTAACGACAACACCAACAGAGGTGGTGTTTCTGATGGATCATGCTGCCACTGGATTATTTGTTGCTTTGCTTATAGGCCTAGTGATGGTGATGGATGGTGCTGCGACAGGATTCATGAGAGGGACACCAGTTGCTTGTGAAAGGGTTGATTTAGATTTTGTTGAAGAGATTAAAACAGAATCGGCACTTGCGCAAATATTTATGCATCAAAACATTGCAAAATCGTATGGGATAACAAGAACTTCTGAATCTACTTATTATGTTAGAGAGCTTTGTGGATCTAGCCTGAAAGACTTCATCAACTACTTTGCAACGAAATCGAAGGAACTGGTCACCGACATAGAAGCTTTAAGGTTTCTAAGAGAGTTAAAGGGAAATATGTCACCATGTTTGATGAATAAAAGGCACCAACCTTTTCCACCGGTTCTGCAATTATTGAGGGATGTGGTGTTTGACATGACATATTTGCACGAGGAGGGTTATCTGCACCGGAACCTGAACCCGAGCAGTGTTTTAATAACCACGGGGAAGCGGTTACGTGCAAAAATTTCTGATTTCAGTGTCAGCCAAAAGCTTGATGGAAATATAATTTTATACGATAATGTTACCGAAAGGTACATAGGATGCAATCTTGTTCTACGTCATCAACGGCAAATACGTGCCAGTGATATTTTTAGCATGGGCTGTGTGTTTTCGTTTTGTCTAAGGGATGGCCAACACCCATTTGGCGATGGGGATGATTCAGAACGTGCTGACAACATATTGAAAAACAAGAAATGTATCACTTCAGCCCCTGAAGTTGAGGATCTAATTTCTAAATTACTACACCCTAATCCTGAGCAAAGGCCATATGTAGAAGATATCCTATTACATCCTATGTTTAATTTGGAGCCAGGAGAAAAGACTTCAATTGTTCTAAAATTAGCTACTTCACTCCAGCAAGATAACATATATAATAATTTTGGGCTTGTTAAAGACCTACGGAAAGCAATCAGAAATAAGACTGCTCATCATGGAGATCCACAAAGCAGACACCTCAAGGGTGTGCTCGGAACTTATCCGGACAGTATTTTTACATATTTCGACAACAGATTTCCGATGCTGCTGATTGAGATCTATAAGATTGTCGTGAGGTATTGGAGGTTTAGGCCACGTTTTGAGAAATATTTTAGACTGGAGGATTAG	1230	0.4049	MDRAATGFVAVLRGLVTTTPTEVVFLMDHAATGLFVALLIGLVMVMDGAATGFMRGTPVACERVDLDFVEEIKTESALAQIFMHQNIAKSYGITRTSESTYYVRELCGSSLKDFINYFATKSKELVTDIEALRFLRELKGNMSPCLMNKRHQPFPPVLQLLRDVVFDMTYLHEEGYLHRNLNPSSVLITTGKRLRAKISDFSVSQKLDGNIILYDNVTERYIGCNLVLRHQRQIRASDIFSMGCVFSFCLRDGQHPFGDGDDSERADNILKNKKCITSAPEVEDLISKLLHPNPEQRPYVEDILLHPMFNLEPGEKTSIVLKLATSLQQDNIYNNFGLVKDLRKAIRNKTAHHGDPQSRHLKGVLGTYPDSIFTYFDNRFPMLLIEIYKIVVRYWRFRPRFEKYFRLED	409

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Trre11g04615	409	ProSiteProfiles	KEN domain profile.	272	407	IPR010513	GO:0004540\|GO:0006397
Trre11g04615	409	Pfam	Ribonuclease 2-5A	321	405	IPR010513	GO:0004540\|GO:0006397
Trre11g04615	409	Pfam	Protein kinase domain	70	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre11g04615	409	SUPERFAMILY	Protein kinase-like (PK-like)	55	310	IPR011009	-
Trre11g04615	409	Gene3D	KEN domain	316	409	IPR038357	-
Trre11g04615	409	Gene3D	Transferase(Phosphotransferase) domain 1	68	313	-	-
Trre11g04615	409	ProSiteProfiles	Protein kinase domain profile.	24	309	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Trre11g04615	409	PANTHER	IRE1-RELATED	53	406	IPR045133	GO:0004521\|GO:0004674\|GO:0030968
Trre11g04615	409	SMART	PGNneu	337	392	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre11g04615	Trre-Chr11	57929824	57932464	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre11g04615	52	304	MAP Kinase Kinase Kinase	AT1G14000	24.727	1.05e-11	64.3

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	IRE1	Trre11g04615		Pkinase	2.3e-22	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre11g04615	K08852		-	csin:114283063	187.963

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