Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04599 ATGGGTGCTTCTGGAAAATGGTTTAAATCACTTCTTTCTCATAAAAAAACATCATCAACTACTGATCAAGAGAAGAAGTTTAATGGTGATAACAAGATTAGTACTAAGAAAAAATGGAAGCTATGGAAGACATCTTCTGAAGGGTCTTCTTCAACTTCCTCTATGAACAAGAATGGTGCTGCTGTGTACGATTCTTCGGTGACTGCTGCTGCTGTGGCTGTTGTTGTCCGAGCTCAACCTAAAGATTTCATAGTCATCAGACAGGAATGGGCTGCTATTCGTATTCAGGCCGTGTTTCGAGCCTTCCTGGCAAGAAGAGCTTTGAGGGCATTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTAGAGGTAGGCAAGTGAGGAAACAAGCAGCTGTTACTCTAAAATGCATGCAAGCTCTTGTTAGAGTTCAGGCACGCGTAAGGGCTAGGAATGTCAGGAATTCTCCAGAAGGGAAAGCAGTGCAGCAGCTAATCGACGACCATCGCAACCAAGCTGATTCTGTCAAACTTGTAGAGCAAGGATGGTGTGAAATGCCTGGAACTGCGGATGAAGTTAAAACAAAGCTAAGAATGAGGCAAGAAGGAGCCATCAAGAGAGATAGAGCAATGGCATACTCTCTATCCACACAGCAGTCAAGAATCAGTTCTAGTCCAAACTCAAAAGCCACAACAAAATCAATCACTCTTCTCAAGCATCATCAAAATCTTGACAACAATAAGAGCTTAGGAAATAGCTTGTTAGAACGCTGGATGTCGACCAAACCATGTCCATGGGAGAGTCCAATCTCAAGCAGGAAGAGTGAAGAACTTGTTCCTAATTTTCAATCAAGAAGGAATGGTGTAACTACTAGGATTTCAGCTCTTAAAATTTGTCAGCAAACTCCATCATCTTCGACAATAAGCTCCGAATACATGAATGATGATAGCCTTATATCAACTTCATGTACATCTGAATCTCCATCTATGCCATTCACTAACACTGTTATGGTTGAAACAAGTGAAGAAAAAGATGTTCATTTACCTAGCTACATGAATCTAACAGAATCAACTAAGGCTAAATTCAAAGGCTATAGGTCTACTTCCCAGAATTCAAAGAGGCTCGCAATGGACGATTGTATGTCTCATAACACAAGTTCAACCTTTCTGAATGGATATAATAGTAGAAGCAGTTCCGGTTCTGACCCTTCGGTTAATCCATGGAAGGATCGTTGCACAACGCCACTAAGGGCAAGCTATTATCAAAAACGATATGCCAGAAGATAG 1284 0.4151 MGASGKWFKSLLSHKKTSSTTDQEKKFNGDNKISTKKKWKLWKTSSEGSSSTSSMNKNGAAVYDSSVTAAAVAVVVRAQPKDFIVIRQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLKCMQALVRVQARVRARNVRNSPEGKAVQQLIDDHRNQADSVKLVEQGWCEMPGTADEVKTKLRMRQEGAIKRDRAMAYSLSTQQSRISSSPNSKATTKSITLLKHHQNLDNNKSLGNSLLERWMSTKPCPWESPISSRKSEELVPNFQSRRNGVTTRISALKICQQTPSSSTISSEYMNDDSLISTSCTSESPSMPFTNTVMVETSEEKDVHLPSYMNLTESTKAKFKGYRSTSQNSKRLAMDDCMSHNTSSTFLNGYNSRSSSGSDPSVNPWKDRCTTPLRASYYQKRYARR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04599 427 ProSiteProfiles IQ motif profile. 112 139 IPR000048 GO:0005515
Trre11g04599 427 ProSiteProfiles IQ motif profile. 88 116 IPR000048 GO:0005515
Trre11g04599 427 Pfam IQ calmodulin-binding motif 112 129 IPR000048 GO:0005515
Trre11g04599 427 Pfam IQ calmodulin-binding motif 90 109 IPR000048 GO:0005515
Trre11g04599 427 MobiDBLite consensus disorder prediction 390 407 - -
Trre11g04599 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 130 IPR027417 -
Trre11g04599 427 Gene3D - 86 135 - -
Trre11g04599 427 MobiDBLite consensus disorder prediction 390 411 - -
Trre11g04599 427 SMART iq_5 87 109 IPR000048 GO:0005515
Trre11g04599 427 SMART iq_5 110 131 IPR000048 GO:0005515
Trre11g04599 427 PANTHER IQ-DOMAIN 5-RELATED 1 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04599 Trre-Chr11 57882402 57884677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04599 1 409 IQD Protein Family AT1G72670 43.349 8.17e-89 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04599 - - tpra:123894121 682.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04599 11 57882402 57884677 Trre15g00632 15 4618902 4622034 PCT