Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04598 ATGGGTGCTTCTGGAAAATGGTTTAAATCACTTCTTTCTCATAAAAAAACATCATCAACTACTGATCAAGAGAAGAAGTTTAATGGTGATAACAAGATTAGTACTAAGAAAAAATGGAAGCTATGGAAGACATCTTCTGAAGGGTCTTCTTCAACTTCCTCTATGAACAAGAATGGTGCTGCTGTGTACGATTCTTCGGTGACTGCTGCTGCTGTGGCTGTTGTTGTCCGAGCTCAACCTAAAGATTTCATAGTCATCAGACAGGAATGGGCTGCTATTCGTATTCAGGCCGTGTTTCGAGCCTTCCTGGCAAGAAGAGCTTTGAGGGCATTGAGGGCAGTGGTGAGGCTGCAAGCTATATTTAGAGGTAGGCAAGTGAGGAAACAAGCAGCTGTTACTCTAAAATGCATGCAAGCTCTTGTTAGAGTTCAGGCACGCGTAAGGGCTAGGAATGTCAGGAATTCTCCAGAAGGGAAAGCAGTGCAGCAGCTAATCGACGACCATCGCAACCAAGCTGATTCTGTCAAACTTGTAGAGCAAGGATGGTGTGAAATGCCTGGAACTGCGGATGAAGTTAAAACAAAGCTAAGAATGAGGCAAGAAGGAGCCATCAAGAGAGATAGAGCAATGGCATACTCTCTATCCACACAGTCAAGAATCAGTTCTAGTCCAAACTCAAAAGCCACAACAAAATCAATCACTCTTCTCAAGCATCATCAAAATCTTGACAACAATAAGAGCTTAGGAAATAGCTTGTTAGAACGCTGGATGTCGACCAAACCATGTCCATGGGAGAGTCCAATCTCAAGCAGGAAGAGTGAAGAACTTGTTCCTAATTTTCAATCAAGAAGGAATGGTGTAACTACTAGGATTTCAGCTCTTAAAATTTGTCAGCAAACTCCATCATCTTCGACAATAAGCTCCGAATACATGAATGATGATAGCCTTATATCAACTTCATGTACATCTGAATCTCCATCTATGCCATTCACTAACACTGTTATGGTTGAAACAAGTGAAGAAAAAGATGTTCATTTACCTAGCTACATGAATCTAACAGAATCAACTAAGGCTAAATTCAAAGGCTATAGGTCTACTTCCCAGAATTCAAAGAGGCTCGCAATGGACGATTGTATGTCTCATAACACAAGTTCAACCTTTCTGAATGGATATAATAGTAGAAGCAGTTCCGGTTCTGACCCTTCGGTTAATCCATGGAAGGATCGTTGCACAACGCCACTAAGGGCAAGCTATTATCAAAAACGATATGCCAGAAGATAG 1281 0.4145 MGASGKWFKSLLSHKKTSSTTDQEKKFNGDNKISTKKKWKLWKTSSEGSSSTSSMNKNGAAVYDSSVTAAAVAVVVRAQPKDFIVIRQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRQVRKQAAVTLKCMQALVRVQARVRARNVRNSPEGKAVQQLIDDHRNQADSVKLVEQGWCEMPGTADEVKTKLRMRQEGAIKRDRAMAYSLSTQSRISSSPNSKATTKSITLLKHHQNLDNNKSLGNSLLERWMSTKPCPWESPISSRKSEELVPNFQSRRNGVTTRISALKICQQTPSSSTISSEYMNDDSLISTSCTSESPSMPFTNTVMVETSEEKDVHLPSYMNLTESTKAKFKGYRSTSQNSKRLAMDDCMSHNTSSTFLNGYNSRSSSGSDPSVNPWKDRCTTPLRASYYQKRYARR 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04598 426 ProSiteProfiles IQ motif profile. 112 139 IPR000048 GO:0005515
Trre11g04598 426 MobiDBLite consensus disorder prediction 389 410 - -
Trre11g04598 426 ProSiteProfiles IQ motif profile. 88 116 IPR000048 GO:0005515
Trre11g04598 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 77 130 IPR027417 -
Trre11g04598 426 Gene3D - 86 135 - -
Trre11g04598 426 SMART iq_5 87 109 IPR000048 GO:0005515
Trre11g04598 426 SMART iq_5 110 131 IPR000048 GO:0005515
Trre11g04598 426 Pfam IQ calmodulin-binding motif 90 109 IPR000048 GO:0005515
Trre11g04598 426 Pfam IQ calmodulin-binding motif 112 129 IPR000048 GO:0005515
Trre11g04598 426 PANTHER IQ-DOMAIN 5-RELATED 1 399 - -
Trre11g04598 426 MobiDBLite consensus disorder prediction 389 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04598 Trre-Chr11 57882402 57884677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04598 1 408 IQD Protein Family AT1G72670 43.218 8.89e-90 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04598 - - tpra:123894121 681.404