Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04597 ATGGGGCATCCCTCTTGCTGCAACAAACAAAAGGTGAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGGTTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCCACAAGAAGCTGCTCTCATTATTGAACTTCATACTATTCTAGGAAACAGGTGGGCTCAGATAGCAAAACATTTACCAGGAAGAACAGATAATGAAGTGAAGAACTTTTGGAATTCAAGCATAAAAAAGAAACTACTTTCACATGATCTTGTTCCTTCTTTAACCACATTTTCTGATCATATTCACTGTCCTACAAATGTTCCTATGGAAACTTTCTTCCCTTTATTTAATGACAATCCTACCCTTAACAACTTAGATCATCATCTATACCTTCCTATCAATATCCCATCTCCAATCCTACAAGATCAAAATGATATCAAGAATATTATTGATATTAACAATTTCAATGCAAATTTCTTACATGTTCATCAAAATAATCCAATCTTACCAGAAATTACAATACCATTATCCAATAATAATAATATTATTGTTCCACCTTCTTATGATCAATTAGATACATGGTCATTATTTCATCATCTCAATCCAAATATTCAAGAAAACCATCACCAAATTATTACCACAAAAAGTGAAACTTCCACACAAAATTTTAATATTGTTGATAATTTTATCAATCCAATTCCAAATACTTGGAATCATTTGGTGGAACTTGAGCCTATTGTGCCAAAAGTTTGTGAAACTATAAAAGATGATTATGTTTGTAGCATTCCATTTTCTTTTACTGCTTCTTCAAAAGAACATGTTGATGTTCATCATCAAGTTGTCAACCAAATTGATCAACAAAAGAGTATAATTTGTCCACAAGATCATCATCATCATAATCAAATTGTGGCTGCATCAAATAATGATCAAGTGGAGTATATTGATTCTCTCATCATGTCATCATTGCCATCTTCTACAACAACATCTTCATCATCACCATTATCATTCTATCAATCACAAGACAAAATTCTCACAAAACCAATCCTTCCTTCAAGTAATTGA 1155 0.3281 MGHPSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDLVPSLTTFSDHIHCPTNVPMETFFPLFNDNPTLNNLDHHLYLPINIPSPILQDQNDIKNIIDINNFNANFLHVHQNNPILPEITIPLSNNNNIIVPPSYDQLDTWSLFHHLNPNIQENHHQIITTKSETSTQNFNIVDNFINPIPNTWNHLVELEPIVPKVCETIKDDYVCSIPFSFTASSKEHVDVHHQVVNQIDQQKSIICPQDHHHHNQIVAASNNDQVEYIDSLIMSSLPSSTTTSSSSPLSFYQSQDKILTKPILPSSN 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04597 384 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre11g04597 384 Gene3D - 69 116 - -
Trre11g04597 384 FunFam Myb transcription factor 69 116 - -
Trre11g04597 384 CDD SANT 17 61 IPR001005 -
Trre11g04597 384 Gene3D - 11 67 - -
Trre11g04597 384 SMART sant 13 63 IPR001005 -
Trre11g04597 384 SMART sant 66 114 IPR001005 -
Trre11g04597 384 FunFam MYB transcription factor 6 66 - -
Trre11g04597 384 PANTHER MYB DOMAIN PROTEIN 55 1 298 - -
Trre11g04597 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre11g04597 384 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre11g04597 384 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre11g04597 384 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Trre11g04597 384 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre11g04597 384 CDD SANT 69 109 IPR001005 -
Trre11g04597 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04597 Trre-Chr11 57868667 57870125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04597 1 118 MYB Transcription Factor Family AT3G13890 94.915 2.95e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre11g04597 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04597 K09422 - gmx:102662609 407.142