Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04595 ATGGCACGGGGAAGGAGGATTAGGGCAAGGTTGCGGAGGAGTAATCTCTATACATTTGGTTGTCTTCGGCCGAATATTTCTGAGGAGGTGCCTCATCCACTTCAAGGTCCTGGTTACTCAAGAACCGTGTATTGCAACCAGCCTCAATTACATGAAAAGAGATCTCTATTTTATTGCAAGAATAATATATCAACGACTAAATATAATGCTATCATGTTTTTACCTAAGGCACTGTTTGAACAGTTTCGAAGGGTTGCCAACATATATTTCCTTTTGGCTGCTTGCCTCTCGGCATCTCCAATTTCACCTTTCAGCGCGTTGAGCATGATTGCTCCTTTGGTTTTTGTTGTGGGACTTAGTATGTTAAAAGAAGCATTGGAGGATTCGCGTAGGTTTCTCCAGGATGTTAAGGTTAATCGCAGGAAAGCTAGTCTACATAGAGGCAATGGTGTTTTTGGTCTCAGGTCATGGCAGAAAATTATGGTTGGGGATATAGTAAAAGTAGAAAAGGACCAATTTTTTCCAGCTGACTTGCTTCTCTTGTCTTCAAGTTATGATGAGGATGGGATATGCTATGTGGAGACCATGAATTTAGATGGAGAGACAAACTTGAAGGTGAAAAGATCTTTGGAGGCTACACTGACCCTTGATAATGATGGAGCTTTTAAGGATTTCTCCGGAACAATACGTTGTGAAGACCCGAATCCAAATCTTTACACTTTTGTTGGGAACTTTGAGTATGATCGTCAGGTTTATCCTCTTGACCCTGGACATATTCTCCTCCGAGATTCAAAGCTTAGGAACACAGAATATGTCTATGGGGTGGTCATTTTCACCGGCCACGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAAAGAAGCACAATAGAGAAAAAGATGGATCATATCATATACACTCTTTTCACTGTCCTTATATTGATATCCTTTATTAGTTCAATAGGATTTGTTGTTAAGACTAAGTACCAGGCCACAGAGTGGTGGTATTTACGCCCCGACGATATTGAATATCAGTATGATCCCGCGAAAATTGGATTGGCTGGGATGAGCCATCTGATCACTGCCCTTATTCTTTATGGATATTTGATACCCATCTCTCTTTATGTTTCAATTGAGATTGTTAAGGTATTACAGGCCACCTTCATTAACCAAGACCTTCAAATGTATGATGAAGAAACTGGGACTCCTGCTGAAGCACGAACGTCAAATCTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACCTGCAATCAGATGGACTTTTTGAAGTGCTCCATTGCTGGTACTTCCTATGGCGTACGCTCCAGTGAAGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGATGAAGAAGATTCAGATCTCTCTAATTTCCCCATGCAAAAGAAGGGTAACGCGCCGTGGGAAAATGTTAGAAGAGATGAAGAAATTGAACTTGAGACAGTTGTTAATTCTAAGGGTGGTGAGAATCAAAGACCTTCTATAAAGGGATTTGGTTTTGTTGACAGCCGCCTCATGAATGGCAATTGGTCGAAAGATCCCAATGCTGATGTCATTCTGTTGTTTTTCCGGATACTAGCAGTCTGTCACACTGCCATTCCCGAGCTTAATGAGGAGAATGACAGTTGTACTTATGAAGCTGAATCACCTGATGAAGGGGCTTTTCTTGTAGCTGCTAGAGAATTTGGTTTTGAATTTTATAGAAGAACCCAATCAACTGTTGTTGTACGGGAAAGAATTTCTGCTTCAGGACAAGTGGTTGAAAGAGAGTATAAAATATTGAATCTGCTGGATTTTACTAGTAAAAGAAAGCGTATGTCGGTGATTGTGCGTGATGAGGAGGGAAACATTATTCTCTTATGCAAAGGAGCTGACAGTATCATATTTGATCGATTATCTAAGAATGGAAAGAAGTATTTGGATGCCACTTCTAGGCATTTGAATGAATATGGAGAAGTGGGTTTGAGAACACTAGCCCTGGCTTACAGAAATCTTGATGAACAAGAGTACTCTGATTGGAACGACGAGTTTCAGAAAGCCAAGACAACTGTTGGGCCTGACAGAGACGCAATGCTTGAGAAGGTATCAGATAGTATGGAAAGAGAGTTGATTCTTGTTGGGGCTACTGCTGTGGAAGACAAGCTGCAGAAAGGGGTGCCTCAATGCATTGATAAACTTGCTCAAGCTGGTTTAAAGATCTGGGTCTTGACAGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCATGCAGTTTGCTTCGACAGGGCATGAAGCAAATCTGTATCTCTACTGCAAATTCGGATTCAGTAATCAATGATGGGAGAGAGGTAATCAAAGGCGACATCTTGACTCAAATAACTAATGCCTCACAATCGATGAAGCTGGAGAAGGACCCACATGCTGCATTTGCATTAATTATTGACGGAAAAACTCTAACATATGCTCTAGAAGATGATGTCAAACACCAATTTTTGGCATTAGCTGTTGAGTGTGCATCTGTCATCTGCTGTCGTGTGTCTCCCAAGCAAAAGGCTTTGGTAACAAGATTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCAATAGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAGGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCCATTGCTCAATTTCGATTTTTGGAGCGGCTTCTGGTAGTCCATGGACATTGGTGTTACAAGAGAATTGCACAGATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATATTCTATTTTGAGGCCTTTGCGGGGTTCTCTGGTCAATCAGTTTATGATGATTGGTACATGATATTGTTTAATGTCGTTCTTACATCGTTGCCTGTCATTTCACTTGGAGTTTTTGAACAAGATGTGCCATCTGAAGTTTGCTTACAGTTTCCTGCACTATATCAGCAAGGACCCAAAAATTTGTTCTTTGACTGGTATAGAATATTGGGATGGATGGGGAATGGTCTATACTCTTCCCTTGTCATCTTCTTCCTTGTCATCATCATCTTCTATGACCAAGCATTCCGTCTGAATGGCCAGACTGCAGACATGGCTGCTGTTGGTACCACAATGTTCACCTCCATCATCTGGGCTGTCAACTGCCAGATTGCCTTGACAATGAGCCATTTTACATGGATACAACACCTCTTTGTGTGGGGCAGCATAGCCAGTTGGTACCTCTTTCTCTTATTATATGGCATGCTTTCTCCAAAATATTCCAAGACTGCGTATCAAATATTGGTTGAAGTGCTTGCTCCTGCTCCTATTTATTGGGCAGCAACCATTCTAGTAACTGTTACATGCAATCTTCCTTATCTTGCCCACATATCATTCCAAAGGTGTTTTAATCCCATGGATCATCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCTAAAGCAAGACAAGAAACAAAGATTGGTTTCACAGCAAGAGTAGAAGCAAAGATCAGGCAGCTAAAAGGGAGGCTGCAGAAGAAGCAATCTATAACAGGGGTTTTGTCCCCATCATGA 3678 0.4146 MARGRRIRARLRRSNLYTFGCLRPNISEEVPHPLQGPGYSRTVYCNQPQLHEKRSLFYCKNNISTTKYNAIMFLPKALFEQFRRVANIYFLLAACLSASPISPFSALSMIAPLVFVVGLSMLKEALEDSRRFLQDVKVNRRKASLHRGNGVFGLRSWQKIMVGDIVKVEKDQFFPADLLLLSSSYDEDGICYVETMNLDGETNLKVKRSLEATLTLDNDGAFKDFSGTIRCEDPNPNLYTFVGNFEYDRQVYPLDPGHILLRDSKLRNTEYVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDHIIYTLFTVLILISFISSIGFVVKTKYQATEWWYLRPDDIEYQYDPAKIGLAGMSHLITALILYGYLIPISLYVSIEIVKVLQATFINQDLQMYDEETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRSSEVELAAAKQMASDLDEEDSDLSNFPMQKKGNAPWENVRRDEEIELETVVNSKGGENQRPSIKGFGFVDSRLMNGNWSKDPNADVILLFFRILAVCHTAIPELNEENDSCTYEAESPDEGAFLVAAREFGFEFYRRTQSTVVVRERISASGQVVEREYKILNLLDFTSKRKRMSVIVRDEEGNIILLCKGADSIIFDRLSKNGKKYLDATSRHLNEYGEVGLRTLALAYRNLDEQEYSDWNDEFQKAKTTVGPDRDAMLEKVSDSMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMKQICISTANSDSVINDGREVIKGDILTQITNASQSMKLEKDPHAAFALIIDGKTLTYALEDDVKHQFLALAVECASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRLNGQTADMAAVGTTMFTSIIWAVNCQIALTMSHFTWIQHLFVWGSIASWYLFLLLYGMLSPKYSKTAYQILVEVLAPAPIYWAATILVTVTCNLPYLAHISFQRCFNPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRQLKGRLQKKQSITGVLSPS 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04595 1225 Pfam Cation transport ATPase (P-type) 547 652 - -
Trre11g04595 1225 SFLD Haloacid Dehalogenase 406 933 - -
Trre11g04595 1225 SUPERFAMILY Calcium ATPase, transduction domain A 147 288 IPR008250 -
Trre11g04595 1225 NCBIfam HAD-IC family P-type ATPase 851 963 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre11g04595 1225 SUPERFAMILY HAD-like 412 926 IPR036412 -
Trre11g04595 1225 Gene3D - 592 725 IPR023299 GO:0000166
Trre11g04595 1225 Pfam Phospholipid-translocating P-type ATPase C-terminal 910 1160 IPR032630 -
Trre11g04595 1225 FunFam Phospholipid-transporting ATPase 725 922 - -
Trre11g04595 1225 Coils Coil 450 470 - -
Trre11g04595 1225 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1153 IPR023298 -
Trre11g04595 1225 Gene3D - 421 433 IPR023214 -
Trre11g04595 1225 Gene3D - 434 457 IPR023299 GO:0000166
Trre11g04595 1225 SFLD p-type atpase 406 933 IPR044492 -
Trre11g04595 1225 CDD P-type_ATPase_APLT_Dnf-like 61 1042 - -
Trre11g04595 1225 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Trre11g04595 1225 PRINTS P-type cation-transporting ATPase superfamily signature 882 901 - -
Trre11g04595 1225 FunFam Phospholipid-transporting ATPase 119 290 - -
Trre11g04595 1225 FunFam Phospholipid-transporting ATPase 592 723 - -
Trre11g04595 1225 Gene3D - 116 290 - -
Trre11g04595 1225 Pfam Phospholipid-translocating ATPase N-terminal 43 110 IPR032631 -
Trre11g04595 1225 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
Trre11g04595 1225 NCBIfam phospholipid-translocating P-type ATPase 58 1168 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre11g04595 1225 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 524 687 IPR023299 GO:0000166
Trre11g04595 1225 Gene3D - 726 922 IPR023214 -
Trre11g04595 1225 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 1179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04595 Trre-Chr11 57834032 57839747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04595 1 1217 Primary Pumps ATPases AT1G17500 75.205 0.0 1910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04595 K01530 - gmx:100778710 2168.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04595 11 57834032 57839747 Trre15g00645 15 4723869 4729423 PCT